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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtacccttaattaagttagtgtactaggaatttgaagtgcgtgtctgtatgcaattgtgtgtttcattcttgtatttaggttcttctggacaattgcttcgcagggctgcctttcattggtttcgagttttctttttttctcatgatttttatatttgttaaatgttttgctttcaatcttggatgttgcagAGTGTGTCACTATCAGAGAACGATCTCTTAGCATGCTGTGGATTCGAGTGCGGCTATGGCTGCGAGGGTGGGTACCCTATAAGAGCCTGGAAATACTTCA

Basic information

species Physcomitrella patens
transcript PP1S7_406V6.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208400722|gb|DC904900.1|DC904900
EST:     TTGGGGCTGTTGAGTCACTGACTGATCGTTTCTGCATTCACTTGAATGAA                         AGTGTGTCACTATCAGAGAACGATCTCTTAGCATGCTGTGGATTCGAGTGC
genomic: TTGGGGCTGTTGAGTCACTGACTGATCGTTTCTGCATTCACTTGAATGAAgtgagtaccc ... gatgttgcagAGTGTGTCACTATCAGAGAACGATCTCTTAGCATGCTGTGGATTCGAGTGC
EST: gi|67570161|gb|BJ942985.1|BJ942985
EST:     TTGGGGCTGTTGAGTCACTGACTGATCGTTTCTGCATTCACTTGAATGAA                         AGTGTGTCACTATCAGAGAACGATCTCTTAGCATGCTGTG
genomic: TTGGGGCTGTTGAGTCACTGACTGATCGTTTCTGCATTCACTTGAATGAAgtgagtaccc ... gatgttgcagAGTGTGTCACTATCAGAGAACGATCTCTTAGCATGCTGTG
EST: gi|162171829|gb|FC348979.1|FC348979
EST:     TTGGGGCTGTTGAGTCACTGACTGATCGTTTCTGCATTCACTTGAATGAA                         AGTGTGTCACTATCAGAGAACGATCTCTTAGCATGCTGTGGATTCGAGTGC
genomic: TTGGGGCTGTTGAGTCACTGACTGATCGTTTCTGCATTCACTTGAATGAAgtgagtaccc ... gatgttgcagAGTGTGTCACTATCAGAGAACGATCTCTTAGCATGCTGTGGATTCGAGTGC
EST: gi|208377375|gb|DC906644.1|DC906644
EST:     TTGGGGCTGTTGAGTCACTGACTGATCGTTTCTGCATTCACTTGAATGAA                         AGTGTGTCACTATCAGAGAACGATCTCTTAGCATGCTGTGGATTCGAGTGC
genomic: TTGGGGCTGTTGAGTCACTGACTGATCGTTTCTGCATTCACTTGAATGAAgtgagtaccc ... gatgttgcagAGTGTGTCACTATCAGAGAACGATCTCTTAGCATGCTGTGGATTCGAGTGC
EST: gi|162195749|gb|FC371140.1|FC371140
EST:     TTGGGGCTGTTGAGTCACTGACTGATCGTTTCTGCATTCACTTGAATGAA                         AGTGTGTCACTATCAGAGAACGATCTCTTAGCATGCTGTGGATTCGAGTGC
genomic: TTGGGGCTGTTGAGTCACTGACTGATCGTTTCTGCATTCACTTGAATGAAgtgagtaccc ... gatgttgcagAGTGTGTCACTATCAGAGAACGATCTCTTAGCATGCTGTGGATTCGAGTGC
EST: gi|100425949|gb|BY977201.1|BY977201
EST:     TTGGGGCTGTTGAGTCACTGACTGATCGTTTCTGCATTCACTTGAATGAA                         AGTGTGTCACTATCAGAGAACGATCTCTTAGCATGCTGTGGATTCGAGTGC
genomic: TTGGGGCTGTTGAGTCACTGACTGATCGTTTCTGCATTCACTTGAATGAAgtgagtaccc ... gatgttgcagAGTGTGTCACTATCAGAGAACGATCTCTTAGCATGCTGTGGATTCGAGTGC
EST: gi|100371973|gb|BY967643.1|BY967643
EST:     TTGGGGCTGTTGAGTCACTGACTGATCGTTTCTGCATTCACTTGAATGAA                         AGTGTGTCACTATCAGAGAACGATCTCTTAGCATGCTGTGGATTCGAGTGC
genomic: TTGGGGCTGTTGAGTCACTGACTGATCGTTTCTGCATTCACTTGAATGAAgtgagtaccc ... gatgttgcagAGTGTGTCACTATCAGAGAACGATCTCTTAGCATGCTGTGGATTCGAGTGC
EST: gi|162162644|gb|FC338946.1|FC338946
EST:     TTGGGGCTGTTGAGTCACTGACTGATCGTTTCTGCATTCACTTGAATGAA                         AGTGTGTCACTATCAGAGAACGATCTCTTAGCATGCTGTGGATTCGAGTGC
genomic: TTGGGGCTGTTGAGTCACTGACTGATCGTTTCTGCATTCACTTGAATGAAgtgagtaccc ... gatgttgcagAGTGTGTCACTATCAGAGAACGATCTCTTAGCATGCTGTGGATTCGAGTGC
EST: gi|208397325|gb|DC908229.1|DC908229
EST:     TTGGGGCTGTTGAGTCACTGACTGATCGTTTCTGCATTCACTTGAATGAA                         AGTGTGTCACTATCAGAGAACGATCTCTTAGCATGCTGTGGATTCGAGTGC
genomic: TTGGGGCTGTTGAGTCACTGACTGATCGTTTCTGCATTCACTTGAATGAAgtgagtaccc ... gatgttgcagAGTGTGTCACTATCAGAGAACGATCTCTTAGCATGCTGTGGATTCGAGTGC
EST: gi|18373041|gb|BJ204643.1|BJ204643
EST:     TGGGGGCTGTTGAGTCACTGACTGATCGTTTCTGCATTCACTTGAATGAA                         AGTGTGTCACTATCAGAGAACGATCTCTTAGCATGCTGTGGATTTCGAGTG
genomic: TGGGG-CTGTTGAGTCACTGACTGATCGTTTCTGCATTCACTTGAATGAAgtgagtaccc ... gatgttgcagAGTGTGTCACTATCAGAGAACGATCTCTTAGCATGCTGTGGATT-CGAGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctcatgatttttatatttgttaaatgttttgctttcaatcttggatgttgcagAGTGTGTCACTATCAGAGAACGATCTCTTAGCATGCTGTGGATTCGAGTGCGGCTATGGCTGCGAGGGTGGGTACCCTATAAGAGCCTGGAAATACTTCA
        atttttatatttgtta  TA-rich tract