1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...gtcgttgccttcacatacaagcagaaatagacgttgtttgatgttttcaaagatagcgtgtgttagtttaagtgaataattttcccattcctttgcccagGCTTTTATCCCTTCCACGGGGCGCGGAGTACAAGGTGCAACATCGCATTGTTTGGGGCAGAATTTCTCCAAGATGTTCGACATCTTATTTGAAGACGAGA
species | Physcomitrella patens |
transcript | PP1S7_175V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAAGTGAGGTCGAGAAGTTTGCTGGTGGTCTGTATACTACTACTGTAGAG GCTTTTATCCCTTCCACGGGGCGCGGAGTACAAGGTGCAACATCGCATTGTEST: gi|162264776|gb|FC440343.1|FC440343
genomic: AAAGTGAGGTCGAGAAGTTTGCTGGTGGTCTGTATACTACTACTGTAGAGgtactccttc ... ctttgcccagGCTTTTATCCCTTCCACGGGGCGCGGAGTACAAGGTGCAACATCGCATTGT
EST: AAAGTGAGGTCGAGAAGTTTGCTGGTGGTCTGTATACTACTACTGTAGAG GCTTTTATCCCTTCCACGGGGCGCGGAGTACAAGGTGCAACATCGCATTGTEST: gi|162215796|gb|FC390861.1|FC390861
genomic: AAAGTGAGGTCGAGAAGTTTGCTGGTGGTCTGTATACTACTACTGTAGAGgtactccttc ... ctttgcccagGCTTTTATCCCTTCCACGGGGCGCGGAGTACAAGGTGCAACATCGCATTGT
EST: CGAGAAGTTTGCTGGTGGTCTGTATACTACTACTGTAGAG GCTTTTATCCCTTCCACGGGGCGCGGAGTACAAGGTGCAACATCGCATTGTEST: gi|162173417|gb|FC349796.1|FC349796
genomic: CGAGAAGTTTGCTGGTGGTCTGTATACTACTACTGTAGAGgtactccttc ... ctttgcccagGCTTTTATCCCTTCCACGGGGCGCGGAGTACAAGGTGCAACATCGCATTGT
EST: AAAGTGAGGTCGAGAAGTTTGCTGGTGGTCTGTATACTACTACTGTAGAG GCTTTTATCCCTTCCACGGGGCGCGGAGTACAAGGTGCAACATCGCATTGTEST: gi|162158888|gb|FC333955.1|FC333955
genomic: AAAGTGAGGTCGAGAAGTTTGCTGGTGGTCTGTATACTACTACTGTAGAGgtactccttc ... ctttgcccagGCTTTTATCCCTTCCACGGGGCGCGGAGTACAAGGTGCAACATCGCATTGT
EST: AAAGTGAGGTCGAGAAGTTTGCTGGTGGTCTGTATACTACTACTGTAGAG GCTTTTATCCCTTCCACGGGGCGCGGAGTACAAGGTGCAACATCGCATTGTEST: gi|162258851|gb|FC434858.1|FC434858
genomic: AAAGTGAGGTCGAGAAGTTTGCTGGTGGTCTGTATACTACTACTGTAGAGgtactccttc ... ctttgcccagGCTTTTATCCCTTCCACGGGGCGCGGAGTACAAGGTGCAACATCGCATTGT
EST: AAAGTGAGGTCGAGAAGTTTGCTGGTGGTCTGTATACTACTACTGTAGAG GCTTTTATCCCTTCCACGGGGCGCGGAGTACAAGGTGCAACATCGCATTGT
genomic: AAAGTGAGGTCGAGAAGTTTGCTGGTGGTCTGTATACTACTACTGTAGAGgtactccttc ... ctttgcccagGCTTTTATCCCTTCCACGGGGCGCGGAGTACAAGGTGCAACATCGCATTGT
ttcaaagatagcgtgtgttagtttaagtgaataattttcccattcctttgcccagGCTTTTATCCCTTCCACGGGGCGCGGAGTACAAGGTGCAACATCGCATTGTTTGGGGCAGAATTTCTCCAAGATGTTCGACATCTTATTTGAAGACGAGA
ttttcccattcctttg CT-rich tract
ttagtttaagtgaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcgttgccttcacatacaagcagaaatagacgttgtttgatgttttcaaagatagcgtgtgttagtttaagtgaataattttcccattcctttgcccagGCTTTTATCCCTTCCACGGGGCGCGGAGTACAAGGTGCAACATCGCATTGTTTGGGGCAGAATTTCTCCAAGATGTTCGACATCTTATTTGAAGACGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - -cacatac