Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaattaacttctctgagtactcaactgtggcctttcatctcatagtacaggtcatttgtgaactattaatgcacaaatggatgactggattctgagtaacgatttgttcttgctctgcagGCTTTCAATTGGGAGTCACATAAGCAGCCTTGGTGGAATCTGCTTAAAGGAAGGGTAGATGAAATGGCAGAATGGGGTTTCACGTCTTTGTGGCTACCTC

Basic information

species Physcomitrella patens
transcript PP1S7_147V6.3
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100388161|gb|BY988634.1|BY988634
EST:     AGGATGATCTCATTCAAAGGGGCAGAGAAATACTCTTTCAG                         GCTTTCAATTGGGAGTCACATAAGCAGCCTTGGTGGAATCTGCTTAAAGGA
genomic: AGGATGATCTCATTCAAAGGGGCAGAGAAATACTCTTTCAGgtacaattaa ... tgctctgcagGCTTTCAATTGGGAGTCACATAAGCAGCCTTGGTGGAATCTGCTTAAAGGA
EST: gi|18345589|gb|BJ177632.1|BJ177632
EST:     AGGATGATCTCATTCAAAGGGGCAGAGAAATACTCTTTCAG                         GCTTTCAATTGGGAGTCACATAAGCAGCCTTGGTGGAATCTGCTTAAAGGA
genomic: AGGATGATCTCATTCAAAGGGGCAGAGAAATACTCTTTCAGgtacaattaa ... tgctctgcagGCTTTCAATTGGGAGTCACATAAGCAGCCTTGGTGGAATCTGCTTAAAGGA
EST: gi|100410694|gb|BY992222.1|BY992222
EST:     AGGATGATCTCATTCAAAGGGGCAGAGAAATACTCTTTCAG                         GCTTTCAATTGGGAGTCACATAAGCAGCCTTGGTGGAATCTGCTTAAAGGA
genomic: AGGATGATCTCATTCAAAGGGGCAGAGAAATACTCTTTCAGgtacaattaa ... tgctctgcagGCTTTCAATTGGGAGTCACATAAGCAGCCTTGGTGGAATCTGCTTAAAGGA
EST: gi|100449470|gb|CJ973769.1|CJ973769
EST:     AGGATGATCTCATTCAAAGGGGCAGAGAAATACTCTTTCAG                         GCTTTCAATTGGGAGTCACATAAGCAGCCTTGGTGGAATCTGCTTAAAGGA
genomic: AGGATGATCTCATTCAAAGGGGCAGAGAAATACTCTTTCAGgtacaattaa ... tgctctgcagGCTTTCAATTGGGAGTCACATAAGCAGCCTTGGTGGAATCTGCTTAAAGGA
EST: gi|18346845|gb|BJ178890.1|BJ178890
EST:     AGGATGATCTCATTCAAAGGGGCAGAGAAATACTCTTTCAG                         GCTTTCAATTGGGAGTCACATAAGCAGCCTTGGTGGAATCTGCTT
genomic: AGGATGATCTCATTCAAAGGGGCAGAGAAATACTCTTTCAGgtacaattaa ... tgctctgcagGCTTTCAATTGGGAGTCACATAAGCAGCCTTGGTGGAATCTGCTT
EST: gi|100448604|gb|CJ972903.1|CJ972903
EST:     AGAATGATCTCATTCAAAGGGGCAGAGAAATACTCTTTCAG                         GCTTTCAATTGGGAGTCACATAAGCAGCCTTGGTGGAATCTGCTTAAAGGA
genomic: AGGATGATCTCATTCAAAGGGGCAGAGAAATACTCTTTCAGgtacaattaa ... tgctctgcagGCTTTCAATTGGGAGTCACATAAGCAGCCTTGGTGGAATCTGCTTAAAGGA
EST: gi|18326268|gb|BJ158267.1|BJ158267
EST:     AGGATGATCTCATTCAAAGGGGCAGAGAAATACTCTTTCAG                         GCTTTCAATTGGGAGTCACATAAGCAGCCTTGGTGGAATCTGCTTAAAGGA
genomic: AGGATGATCTCATTCAAAGGGGCAGAGAAATACTCTTTCAGgtacaattaa ... tgctctgcagGCTTTCAATTGGGAGTCACATAAGCAGCCTTGGTGGAATCTGCTTAAAGGA
EST: gi|18342421|gb|BJ174456.1|BJ174456
EST:     AGGATGATCTCATTCAAAGGGGCAGAGAAATACTCTTTCAG                         GCTTTCAATTGGGAGTCACATAAGCAGCCTTGGTGGAATCTGCTTAAAGGA
genomic: AGGATGATCTCATTCAAAGGGGCAGAGAAATACTCTTTCAGgtacaattaa ... tgctctgcagGCTTTCAATTGGGAGTCACATAAGCAGCCTTGGTGGAATCTGCTTAAAGGA
EST: gi|67572484|gb|BJ945308.1|BJ945308
EST:     AGGATGATCTCATTCAAAGGGGCAGAGAAATACTCTTTCAG                         GCTTTCAATTGGGAGTCACATAAGCAGCCTTGGTGGAATCTGCTTAAAGGA
genomic: AGGATGATCTCATTCAAAGGGGCAGAGAAATACTCTTTCAGgtacaattaa ... tgctctgcagGCTTTCAATTGGGAGTCACATAAGCAGCCTTGGTGGAATCTGCTTAAAGGA
EST: gi|100394469|gb|BY972084.1|BY972084
EST:     AGGATGATCTCATTCAAAGGGGCAGAGAAATACTCTTTCAG                         GCTTTCAATTGGGAGTCACATAAGCAGCCTTGGTGGAATCTGCTTAAAGGA
genomic: AGGATGATCTCATTCAAAGGGGCAGAGAAATACTCTTTCAGgtacaattaa ... tgctctgcagGCTTTCAATTGGGAGTCACATAAGCAGCCTTGGTGGAATCTGCTTAAAGGA
EST: gi|18343291|gb|BJ175329.1|BJ175329
EST:     AGGATGATCTCATTCAAAGGGGCAGAGAAATACTCTTTCAG                         GCTTTCAATTGGGAGTCACATAAGCAGCCTTGGTGGAATCTGCTTAAAGGA
genomic: AGGATGATCTCATTCAAAGGGGCAGAGAAATACTCTTTCAGgtacaattaa ... tgctctgcagGCTTTCAATTGGGAGTCACATAAGCAGCCTTGGTGGAATCTGCTTAAAGGA
EST: gi|18366459|gb|BJ198538.1|BJ198538
EST:     AGGATGATCTCATTCAAAGGGGCAGAGAAATACTCTTTCAG                         GCTTTCAATTGGGAGTCACATAAGCAGCCTTGGTGGAATCTGCTTAAAGGA
genomic: AGGATGATCTCATTCAAAGGGGCAGAGAAATACTCTTTCAGgtacaattaa ... tgctctgcagGCTTTCAATTGGGAGTCACATAAGCAGCCTTGGTGGAATCTGCTTAAAGGA
EST: gi|18332465|gb|BJ164478.1|BJ164478
EST:     AGGATGATCTCATTCAAAGGGGCAGAGAAATACTCTTTCAG                         GCTTTCAATTGGGAGTCACATAAGCAGCCTTGGTGGAATCTGCTTAAAGGA
genomic: AGGATGATCTCATTCAAAGGGGCAGAGAAATACTCTTTCAGgtacaattaa ... tgctctgcagGCTTTCAATTGGGAGTCACATAAGCAGCCTTGGTGGAATCTGCTTAAAGGA
EST: gi|18343173|gb|BJ175211.1|BJ175211
EST:     AGGATGATCTCATTCAAAGGGGCAGAGAAATACTCTTTCAG                         GCTTTCAATTGGGAGTCACATAAGCAGCCTTGGTGGAATCTGCTTAAAGGA
genomic: AGGATGATCTCATTCAAAGGGGCAGAGAAATACTCTTTCAGgtacaattaa ... tgctctgcagGCTTTCAATTGGGAGTCACATAAGCAGCCTTGGTGGAATCTGCTTAAAGGA
EST: gi|100393532|gb|BY953438.1|BY953438
EST:     AGGATGATCTCATTCAAAGGGGCAGAGAAATACTCTTTCAG                         GCTTTCAATTGGGAGTCACATAAGCAGCCTTGGTGGAATCTGCTTAAAGGA
genomic: AGGATGATCTCATTCAAAGGGGCAGAGAAATACTCTTTCAGgtacaattaa ... tgctctgcagGCTTTCAATTGGGAGTCACATAAGCAGCCTTGGTGGAATCTGCTTAAAGGA
EST: gi|18344457|gb|BJ176497.1|BJ176497
EST:     AGGATGATCTCATTCAAAGGGGCAGAGAAATACTCTTTCAG                         GCTTTCAATTGGGAGTCACATAAGCAGCCTTGGTGGAATCTGCTTAAAG
genomic: AGGATGATCTCATTCAAAGGGGCAGAGAAATACTCTTTCAGgtacaattaa ... tgctctgcagGCTTTCAATTGGGAGTCACATAAGCAGCCTTGGTGGAATCTGCTTAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaatgcacaaatggatgactggattctgagtaacgatttgttcttgctctgcagGCTTTCAATTGGGAGTCACATAAGCAGCCTTGGTGGAATCTGCTTAAAGGAAGGGTAGATGAAATGGCAGAATGGGGTTTCACGTCTTTGTGGCTACCTC
                            gagtaac  putative branch site (score: 2)
                                     tttgttcttgctct  putative PPT
                                    atttgtt  TA-rich tract