1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...ttcacgcctttagtaactttttcttagtttcgtgtacatcacctcaggatgtttcaaccggagaaaattccgttttctgagatgcgattgctgcatgcagGGTATCAAAGTCTGTCGTGAGGACATTGCAGCAGGTATTGAGGCCCGTGATGGTTTTCCTGCAGATCCTGAAGATATCTTTATAACAGATGGTGCAAGTC
species | Physcomitrella patens |
transcript | PP1S7_123V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TAATCGACAACATCCCTGGCCGAACTACGGGGGCGTACAGTCACAGTCAG GGTATCAAAGTCTGTCGTGAGGACATTGCAGCAGGTATTGAGGCCCGTGATEST: gi|162190436|gb|FC365658.1|FC365658
genomic: TAATCGACAACATCCCTGGCCGAACTACGGGGGCGTACAGTCACAGTCAGgtaaagtcat ... ctgcatgcagGGTATCAAAGTCTGTCGTGAGGACATTGCAGCAGGTATTGAGGCCCGTGAT
EST: TAATCGACAACATCCCTGGCCGAACTACGGGGGCGTACAGTCACAGTCAG GGTATCAAAGTCTGTCGTGAGGACATTGCAGCAGGTATTGAGGCCCGTGATEST: gi|162192249|gb|FC367774.1|FC367774
genomic: TAATCGACAACATCCCTGGCCGAACTACGGGGGCGTACAGTCACAGTCAGgtaaagtcat ... ctgcatgcagGGTATCAAAGTCTGTCGTGAGGACATTGCAGCAGGTATTGAGGCCCGTGAT
EST: TAATCGACAACATCCCTGGCCGAACTACGGGGGCGTACAGTCACAGTCAG GGTATCAAAGTCTGTCGTGAGGACATTGCAGCAGGTATTGAGGCCCGTGAT
genomic: TAATCGACAACATCCCTGGCCGAACTACGGGGGCGTACAGTCACAGTCAGgtaaagtcat ... ctgcatgcagGGTATCAAAGTCTGTCGTGAGGACATTGCAGCAGGTATTGAGGCCCGTGAT
aggatgtttcaaccggagaaaattccgttttctgagatgcgattgctgcatgcagGGTATCAAAGTCTGTCGTGAGGACATTGCAGCAGGTATTGAGGCCCGTGATGGTTTTCCTGCAGATCCTGAAGATATCTTTATAACAGATGGTGCAAGTC
agaaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcacgcctttagtaactttttcttagtttcgtgtacatcacctcaggatgtttcaaccggagaaaattccgttttctgagatgcgattgctgcatgcagGGTATCAAAGTCTGTCGTGAGGACATTGCAGCAGGTATTGAGGCCCGTGATGGTTTTCCTGCAGATCCTGAAGATATCTTTATAACAGATGGTGCAAGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG