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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactccctcaacttcaacaaactagcagatttgtgtcttttaatctgttgcaagcaaattccagttcttgtttatttattcatttatttattttttcgttaagcaatcaaggcaactgttgcagGAATTGGTGGCGCTATACCTATAGAGCCATGGTACATGGGTGGGCCAGTTATTAAGGGCTTTGGTCGTGGCTCAAAATTGCTTGGGACTCCCACTG

Basic information

species Physcomitrella patens
transcript PP1S79_94V6.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S79_94V6.1 (Physcomitrella patens), 3'ss of exon 6
lower sequence: Vv00s0181g00140.t01 (Vitis vinifera), 3'ss of exon 7
gtaactccctcaacttcaacaaactagcagatttgtgtcttttaatctgttgcaagcaaattccagttcttgtttatttattcatttatttattttttcgttaagcaatcaaggcaactgttgcagGAATTGGTGGCGCTATACCTATAGAGCCATGGTACATGGGTGGGCCAGTTATTAAGGGCTTTGGTCGTGGCTCAAAATTGCTTGGGACTCCCACTG
                    || ||  |||||     |||| | || |  | ||| ||  | | |||     | | ||  |    ||| |||||||     | | | ||  |         ||||||  | |  |   |  ||||  ||||||| ||||| || |||||||| || |||||||| ||||||||||| |||||  | |||||    || || |
-----------------gtaaacctctcagat--acttcttatcatattct-caaacatttcctagtaaggttctcttggta---ttacttattttcat-ctgaactattgatttg-taactgcagGGGTCGAGGATACCTTACCAGTAGAGCCTTGGTATATAGGTGGGCCTGTCATTAAGGGATTTGGTCGTGGGTCAAAGGTACTTGGAGTCCCAACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208359039|gb|DC957787.1|DC957787
EST:     TCTGTTGGATTTTCAGCCTGAAGTCTGGGGCTTCCCCTCTCTAAATGATC                         GAATTGGTGGCGCTATACCTATAGAGCCATGGTACATGGGTGGGCCAGTTA
genomic: TCTGTTGGATTTTCAGCCTGAAGTCTGGGGCTTCCCCTCTCTAAATGATCgtaactccct ... actgttgcagGAATTGGTGGCGCTATACCTATAGAGCCATGGTACATGGGTGGGCCAGTTA
EST: gi|67696608|gb|BJ956841.1|BJ956841
EST:     TCTGTTGGATTTTCAGCCTGAAGTCTGGGGCTTCCCCTCTCTAAATGATC                         GAATTGGTGGCGCTATACCTATAGAGCCATGGTACATGGGTGGGCCAGTTA
genomic: TCTGTTGGATTTTCAGCCTGAAGTCTGGGGCTTCCCCTCTCTAAATGATCgtaactccct ... actgttgcagGAATTGGTGGCGCTATACCTATAGAGCCATGGTACATGGGTGGGCCAGTTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttatttattcatttatttattttttcgttaagcaatcaaggcaactgttgcagGAATTGGTGGCGCTATACCTATAGAGCCATGGTACATGGGTGGGCCAGTTATTAAGGGCTTTGGTCGTGGCTCAAAATTGCTTGGGACTCCCACTG
     tttattcatttattta  TA-rich tract