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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgattcctaataaactctacctgtaccatcttttgccactcgcctcagagcgtcaattattatgtaccgctgctaaagatagcttatttatttatgtatagctgatgttttctccacttgccttacatctactggctctgttgtctgacatggtaaacagACGGACATGAAGAAAATCTCGGCGGTTTCCATTTTCTTCGAGACTATGCCATACCGATTGGACGAGTCTACAGGTTACATAGACTACGATACG

Basic information

species Physcomitrella patens
transcript PP1S79_54V6.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162179835|gb|FC355906.1|FC355906
EST:     TAATGGCCTTAGATCTTCCTCATGGTGGTCATTTGTCTCATGGATATCAG                         ACGGACATGAAGAAAATCTCGGCGGTTTCCATTTTCTTCGAGACTATGCCA
genomic: TAATGGCCTTAGATCTTCCTCATGGTGGTCATTTGTCTCATGGATATCAGgtgtgattcc ... tggtaaacagACGGACATGAAGAAAATCTCGGCGGTTTCCATTTTCTTCGAGACTATGCCA
EST: gi|162182305|gb|FC357176.1|FC357176
EST:     TAATGGCCTTAGATCTTCCTCATGGTGGTCATTTGTCTCATGGATATCAG                         ACGGACATGAAGAAAATCTCGGCGGTTTCCATTTTCTTCGAGACTATGCCA
genomic: TAATGGCCTTAGATCTTCCTCATGGTGGTCATTTGTCTCATGGATATCAGgtgtgattcc ... tggtaaacagACGGACATGAAGAAAATCTCGGCGGTTTCCATTTTCTTCGAGACTATGCCA
EST: gi|100385980|gb|BY951174.1|BY951174
EST:     TAATGGCCTTAGATCTTCCTCATGGTGGTCATTTGTCTCATGGATATCAG                         ACGGACATGAAGAANATCTCGGCGGTTTCCATTTTCTTCGAGACTATGCCA
genomic: TAATGGCCTTAGATCTTCCTCATGGTGGTCATTTGTCTCATGGATATCAGgtgtgattcc ... tggtaaacagACGGACATGAAGAAAATCTCGGCGGTTTCCATTTTCTTCGAGACTATGCCA
EST: gi|208379665|gb|DC903720.1|DC903720
EST:     TAATGGCCTTAGATCTTCCTCATGGTGGTCATTTGTCTCATGGATATCAG                         ACGGACATGAAGAAAATCTCGGCGGTTTCCATTTTCTTCGAGACTATGCCA
genomic: TAATGGCCTTAGATCTTCCTCATGGTGGTCATTTGTCTCATGGATATCAGgtgtgattcc ... tggtaaacagACGGACATGAAGAAAATCTCGGCGGTTTCCATTTTCTTCGAGACTATGCCA
EST: gi|162155361|gb|FC331767.1|FC331767
EST:     TAATGGCCTTAGATCTTCCTCATGGTGGTCATTTGTCTCATGGATATCAG                         ACGGACATGAAGAAAATCTCGGCGGTTTCCATTTTCTTCGAGACTATGCCA
genomic: TAATGGCCTTAGATCTTCCTCATGGTGGTCATTTGTCTCATGGATATCAGgtgtgattcc ... tggtaaacagACGGACATGAAGAAAATCTCGGCGGTTTCCATTTTCTTCGAGACTATGCCA
EST: gi|100392460|gb|BY953374.1|BY953374
EST:     TAATGGCCTTAGATCTTCCTCATGGTGGTCATTTGTCTCATGGATATCAG                         ACGGACATGAAGAAAATCTCGGCGGNTTCCATTTTCTTCGAGACTATGCCA
genomic: TAATGGCCTTAGATCTTCCTCATGGTGGTCATTTGTCTCATGGATATCAGgtgtgattcc ... tggtaaacagACGGACATGAAGAAAATCTCGGCGGTTTCCATTTTCTTCGAGACTATGCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttttctccacttgccttacatctactggctctgttgtctgacatggtaaacagACGGACATGAAGAAAATCTCGGCGGTTTCCATTTTCTTCGAGACTATGCCATACCGATTGGACGAGTCTACAGGTTACATAGACTACGATACG
                                     gtctgac  putative branch site (score: 3)