1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...catgttcattgtgttcatgtcccggaacatgttgcattcatgaagacgagcgtcatcatatattgaataaactttctattgatggcttcaccacttgcagGTTTTCCAGCAGCTGGTAGGTATAAACACAGTAATGTACTACAGCCCTTCCATTATAGAATTCGCAGGGTATGCATCACACGAAACTGCACTATTACTCT
species | Physcomitrella patens |
transcript | PP1S78_63V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTGTCACCAAGAGGAAACGTATGGCTCTTACTGCAGGTGTAGGTATGCAG GTTTTCCAGCAGCTGGTAGGTATAAACACAGTAATGTACTACAGCCCTTCCEST: gi|162272983|gb|FC449114.1|FC449114
genomic: TTGTCACCAAGAGGAAACGTATGGCTCTTACTGCAGGTGTAGGTATGCAGgtaagcaatc ... ccacttgcagGTTTTCCAGCAGCTGGTAGGTATAAACACAGTAATGTACTACAGCCCTTCC
EST: TTGTCACCAAGAGGAAACGTATGGCTCTTACTGCAGGTGTAGGTATGCAG GTTTTCCAGCAGCTGGTAGGTATAAACACAGTAATGTACTACAGCCCTTCC
genomic: TTGTCACCAAGAGGAAACGTATGGCTCTTACTGCAGGTGTAGGTATGCAGgtaagcaatc ... ccacttgcagGTTTTCCAGCAGCTGGTAGGTATAAACACAGTAATGTACTACAGCCCTTCC
acgagcgtcatcatatattgaataaactttctattgatggcttcaccacttgcagGTTTTCCAGCAGCTGGTAGGTATAAACACAGTAATGTACTACAGCCCTTCCATTATAGAATTCGCAGGGTATGCATCACACGAAACTGCACTATTACTCT
tattgat putative branch site (score: 3)
cttcacc putative PPT
atatattgaataaact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catgttcattgtgttcatgtcccggaacatgttgcattcatgaagacgagcgtcatcatatattgaataaactttctattgatggcttcaccacttgcagGTTTTCCAGCAGCTGGTAGGTATAAACACAGTAATGTACTACAGCCCTTCCATTATAGAATTCGCAGGGTATGCATCACACGAAACTGCACTATTACTCT
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