1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaactcttatttacgtctgtcttcatcttaccggtacctttcaataataaattcagttttcttagaaattgactctcatgtgtaacatggcacttatctctctgtgtgtgtttattgacaatgttaaattcttattacattgtctgggtttttttttgcagCTCTTATTGTCATCATGGAAGCAGTCCCTTATTCCCGGAGTTTGTGGACTTGTAGCAGGGTTTCTTTACAAGTCCAACGTTTTAGGAATCAAGAAAGTCA
species | Physcomitrella patens |
transcript | PP1S78_54V6.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTGGAGCACGCTTCTCGGACAAGTCCTTCGTTTATTTGGCAGGCTTGCAG CTCTTATTGTCATCATGGAAGCAGTCCCTTATTCCCGGAGTTTGTGGACTTEST: gi|37851035|gb|BJ609043.1|BJ609043
genomic: TTGGAGCACGCTTCTCGGACAAGTCCTTCGTTTATTTGGCAGGCTTGCAGgtaactctta ... ttttttgcagCTCTTATTGTCATCATGGAAGCAGTCCCTTATTCCCGGAGTTTGTGGACTT
EST: TTGGAGCACGCTTCTCGGACAAGTCCTTCGTTTATTTGGCAGGCTTGCAG CTCTTATTGTCATCATGGAAGCAGTCCCTTATTCCCGGAGTTTGTGGACTTEST: gi|18338610|gb|BJ170634.1|BJ170634
genomic: TTGGAGCACGCTTCTCGGACAAGTCCTTCGTTTATTTGGCAGGCTTGCAGgtaactctta ... ttttttgcagCTCTTATTGTCATCATGGAAGCAGTCCCTTATTCCCGGAGTTTGTGGACTT
EST: TTGGAGCACGCTTCTCGGACAAGTCCTTCGTTTATTTGGCAGGCTTGCAG CTCTTATTGTCATCATGGAAGCAGTCCCTTATTCCCGGAGTTTGTGGACTTEST: gi|37842140|gb|BJ600148.1|BJ600148
genomic: TTGGAGCACGCTTCTCGGACAAGTCCTTCGTTTATTTGGCAGGCTTGCAGgtaactctta ... ttttttgcagCTCTTATTGTCATCATGGAAGCAGTCCCTTATTCCCGGAGTTTGTGGACTT
EST: TTGGAGCACGCTTCTCGGACAAGTCCTTCGTTTATTTGGCAGGCTTGCAG CTCTTATTGTCATCATGGAAGCAGTCCCTTATTCCCGGAGTTTGTGGACTTEST: gi|208366589|gb|DC955637.1|DC955637
genomic: TTGGAGCACGCTTCTCGGACAAGTCCTTCGTTTATTTGGCAGGCTTGCAGgtaactctta ... ttttttgcagCTCTTATTGTCATCATGGAAGCAGTCCCTTATTCCCGGAGTTTGTGGACTT
EST: TTGGAGCACGCTTCTCGGACAAGTCCTTCGTTTATTTGGCAGGCTTGCAG CTCTTATTGTCATCATGGAAGCAGTCCCTTATTCCCGGAGTTTGTGGACTT
genomic: TTGGAGCACGCTTCTCGGACAAGTCCTTCGTTTATTTGGCAGGCTTGCAGgtaactctta ... ttttttgcagCTCTTATTGTCATCATGGAAGCAGTCCCTTATTCCCGGAGTTTGTGGACTT
tgtgtttattgacaatgttaaattcttattacattgtctgggtttttttttgcagCTCTTATTGTCATCATGGAAGCAGTCCCTTATTCCCGGAGTTTGTGGACTTGTAGCAGGGTTTCTTTACAAGTCCAACGTTTTAGGAATCAAGAAAGTCA
tattgac putative branch site (score: 4)
tttttttttgc putative PPT
aatgttaaattcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaactcttatttacgtctgtcttcatcttaccggtacctttcaataataaattcagttttcttagaaattgactctcatgtgtaacatggcacttatctctctgtgtgtgtttattgacaatgttaaattcttattacattgtctgggtttttttttgcagCTCTTATTGTCATCATGGAAGCAGTCCCTTATTCCCGGAGTTTGTGGACTTGTAGCAGGGTTTCTTTACAAGTCCAACGTTTTAGGAATCAAGAAAGTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA