1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gttgtcctagatatgtcattcacagttattcatggttgtattaagtgatgttgactattcggatgtgttgcagacagctaataacgttttttgaattcagGATCATCTAAGAAGGCTCTTCTTGCAAAAGACGATGTTGAAGGAGCTCTAGACAGTGATTCAGATGATGATGATAAACCGATTCGCCGAGGAGGGAGACA
species | Physcomitrella patens |
transcript | PP1S78_51V6.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CGCCGGTTCATCCACTACCTTCCTGTCCCCACCCAATTCTCCAAGAGAAG GATCATCTAAGAAGGCTCTTCTTGCAAAAGACGATGTTGAAGGAGCTCTAGEST: gi|162159385|gb|FC335173.1|FC335173
genomic: CGCCGGTTCATCCACTACCTTCCTGTCCCCACCCAATTCTCCAAGAGAAGgtaacctgtt ... ttgaattcagGATCATCTAAGAAGGCTCTTCTTGCAAAAGACGATGTTGAAGGAGCTCTAG
EST: CGCCGGTTCATCCACTACCTTCCTGTCCCCACC-AATTCTCCAAGAGAAG GATCATCTAAGAAGGCTCTTCTTGEST: gi|162226437|gb|FC402417.1|FC402417
genomic: CGCCGGTTCATCCACTACCTTCCTGTCCCCACCCAATTCTCCAAGAGAAGgtaacctgtt ... ttgaattcagGATCATCTAAGAAGGCTCTTCTTG
EST: CGCCGGTTCATCCACTACCTTCCTGTCCCCACCCAATTCTCCAAGAGAAG GATCATCTAAGAAGGCTCTTCTTGCAAAAGACGATGTTGAAGGAGCTCTAGEST: gi|162279685|gb|FC455398.1|FC455398
genomic: CGCCGGTTCATCCACTACCTTCCTGTCCCCACCCAATTCTCCAAGAGAAGgtaacctgtt ... ttgaattcagGATCATCTAAGAAGGCTCTTCTTGCAAAAGACGATGTTGAAGGAGCTCTAG
EST: CGCCGGTTCATCCACTACCTTCCTGTCCCCACCCAATTCTCCAAGAGAAG GATCATCTAAGAAGGCTCTTCTTGCAAAAGACGATGTTGAAGGAGCTCTAGEST: gi|208364858|gb|DC957895.1|DC957895
genomic: CGCCGGTTCATCCACTACCTTCCTGTCCCCACCCAATTCTCCAAGAGAAGgtaacctgtt ... ttgaattcagGATCATCTAAGAAGGCTCTTCTTGCAAAAGACGATGTTGAAGGAGCTCTAG
EST: CGCCGGTTCATCCACTACCTTCCTGTCCCCACCCAATTCTCCAAGAGAAG GATCATCTAAGAAGGCTCTTCTTGCAAAAGACGATGTTGAAGGAGCTCTAGEST: gi|208380518|gb|DC915420.1|DC915420
genomic: CGCCGGTTCATCCACTACCTTCCTGTCCCCACCCAATTCTCCAAGAGAAGgtaacctgtt ... ttgaattcagGATCATCTAAGAAGGCTCTTCTTGCAAAAGACGATGTTGAAGGAGCTCTAG
EST: TCTCCAAGAGAAG GATCATCTAAGAAGGCTCTTCTTGCAAAAGACGATGTTGAAGGAGCTCTAGEST: gi|208359237|gb|DC954160.1|DC954160
genomic: TCTCCAAGAGAAGgtaacctgtt ... ttgaattcagGATCATCTAAGAAGGCTCTTCTTGCAAAAGACGATGTTGAAGGAGCTCTAG
EST: CTCCAAGAGAAG GATCATCTAAGAAGGCTCTTCTTGCAAAAGACGATGTTGAAGGAGCTCTAGEST: gi|208345443|gb|DC917340.1|DC917340
genomic: CTCCAAGAGAAGgtaacctgtt ... ttgaattcagGATCATCTAAGAAGGCTCTTCTTGCAAAAGACGATGTTGAAGGAGCTCTAG
EST: CGCCGGTTCATCCACTACCTTCCTGTCCCCACCCAATTCTCCAAGAGAAG GATCATCTAAGAAGGCTCTTCTTGCAAAAGACGATGTTGAAGGAGCTCTAGEST: gi|208370590|gb|DC948211.1|DC948211
genomic: CGCCGGTTCATCCACTACCTTCCTGTCCCCACCCAATTCTCCAAGAGAAGgtaacctgtt ... ttgaattcagGATCATCTAAGAAGGCTCTTCTTGCAAAAGACGATGTTGAAGGAGCTCTAG
EST: CGCCGGTTCATCCACTACCTTCCTGTCCCCACCCAATTCTCCAAGAGAAG GATCATCTAAGAAGGCTCTTCTTGCAAAAGACGATGTTGAAGGAGCTCTAGEST: gi|162255916|gb|FC431992.1|FC431992
genomic: CGCCGGTTCATCCACTACCTTCCTGTCCCCACCCAATTCTCCAAGAGAAGgtaacctgtt ... ttgaattcagGATCATCTAAGAAGGCTCTTCTTGCAAAAGACGATGTTGAAGGAGCTCTAG
EST: CGCCGGTTCATCCACTACCTTCCTGTCCCCACCCAATTCTCCAAGAGAAG GATCATCTAAGAAGGCTCTTCTTGCAAAAGACGATGTTGAAGGAGCTCTAGEST: gi|162272332|gb|FC449010.1|FC449010
genomic: CGCCGGTTCATCCACTACCTTCCTGTCCCCACCCAATTCTCCAAGAGAAGgtaacctgtt ... ttgaattcagGATCATCTAAGAAGGCTCTTCTTGCAAAAGACGATGTTGAAGGAGCTCTAG
EST: CGCCGGTTCATCCACTACCTTCCTGTCCCCACCCAATTCTCCAAGAGAAG GATCATCTAAGAAGGCTCTTCTTGCAAAAGACGATGTTGAAGGAGCTCTAGEST: gi|208358838|gb|DC957638.1|DC957638
genomic: CGCCGGTTCATCCACTACCTTCCTGTCCCCACCCAATTCTCCAAGAGAAGgtaacctgtt ... ttgaattcagGATCATCTAAGAAGGCTCTTCTTGCAAAAGACGATGTTGAAGGAGCTCTAG
EST: TTCCTGTCCCCACCCAATTCTCCAAGAGAAG GATCATCTAAGAAGGCTCTTCTTGCAAAAGACGATGTTGAAGGAGCTCTAG
genomic: TTCCTGTCCCCACCCAATTCTCCAAGAGAAGgtaacctgtt ... ttgaattcagGATCATCTAAGAAGGCTCTTCTTGCAAAAGACGATGTTGAAGGAGCTCTAG
tgatgttgactattcggatgtgttgcagacagctaataacgttttttgaattcagGATCATCTAAGAAGGCTCTTCTTGCAAAAGACGATGTTGAAGGAGCTCTAGACAGTGATTCAGATGATGATGATAAACCGATTCGCCGAGGAGGGAGACA
taataac putative branch site (score: 1)
cgtttttt CT-rich tract
taataacgtttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgtcctagatatgtcattcacagttattcatggttgtattaagtgatgttgactattcggatgtgttgcagacagctaataacgttttttgaattcagGATCATCTAAGAAGGCTCTTCTTGCAAAAGACGATGTTGAAGGAGCTCTAGACAGTGATTCAGATGATGATGATAAACCGATTCGCCGAGGAGGGAGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgca