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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtttgcacgatttcccccttgacattgagtcacgcactgctttttggaccactacttagaaacacgctggtgttgtacttttagaaacgtacgtggtgtgaaattactttactgttttttcttgtgagttctgcagAAATTCAGTTTGCACCTGATGCTGAATGCGGACCGTGAGTTCCTTGCTCAAAAAAGTGCGCCTCATCGAGATTTTTATAACGTGAGGAAAGTCGACACAC

Basic information

species Physcomitrella patens
transcript PP1S77_89V6.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S77_89V6.1 (Physcomitrella patens), 3'ss of exon 6
lower sequence: AT2G38280.2 (Arabidopsis thaliana), 3'ss of exon 6
gtcagtttgcacgatttcccccttgacattgagtcacgcactgctttttggaccactacttagaaacacgctggtgttgtacttttagaaacgtacgtggtgtgaaattactttactgttttttcttgtgagttctgcagAAATTCAGTTTGCACCTGATGCTGAATGCGGACCGTGAGTTCCTTGCTCAAAAAAGTGCGCCTCATCGAGATTTTTATAACGTGAGGAAAGTCGACACAC
                                                  ||    || ||||| |        |||       | || ||  | |||  ||| ||    |  ||    | ||| ||||      | |||||||| | | | ||  ||||||| ||||||||    || || ||||||||||||||||| || ||||| |||||||||||||| |||||||||||||| |
----------------------------------------------gcaagagttttatttagagaagaatgaatgtcaa----taagcaagtttcgtcttgttaa----cagtatgtctattttttgt------ttcagAAATTTAATCTCCATTTGATGCTTAATGCGGATAAAGAATTTCTTGCTCAAAAAAGTGCACCACATCGTGATTTTTATAACGTTAGGAAAGTCGACACTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162171488|gb|FC346763.1|FC346763
EST:     TTGGCAACGTCCGGACTTTGTGTCATCATCGTCTCAAACTACTGGAGCAG                         AAATTCAGTTTGCACCTGATGCTGAATGCGGACCGTGAGTTCCTTGCTCAA
genomic: TTGGCAACGTCCGGACTTTGTGTCATCATCGTCTCAAACTACTGGAGCAGgtcagtttgc ... agttctgcagAAATTCAGTTTGCACCTGATGCTGAATGCGGACCGTGAGTTCCTTGCTCAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagaaacgtacgtggtgtgaaattactttactgttttttcttgtgagttctgcagAAATTCAGTTTGCACCTGATGCTGAATGCGGACCGTGAGTTCCTTGCTCAAAAAAGTGCGCCTCATCGAGATTTTTATAACGTGAGGAAAGTCGACACAC
                   aaattacttta  TA-rich tract