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...tgcgacttgtgaattgttaagaagaaagtttatcgttagttcgatgatttaacctgttcactgaatttataatgtattatttacttgtctaaaatttcagGTCCTTTTCCTTATGTATCACTACTTCGAAGCAAAGGAGTTTTACAATGCTATTCGGGTGTTCATTGCTGCCTACGTTTGGATGACGGGTTTTGGCAACT
species | Physcomitrella patens |
transcript | PP1S74_21V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTTTCTACTTAAATCGTCATCAAACAGAAGAATGGAAGGGCTGGATGCAG GTCCTTTTCCTTATGTATCACTACTTCGAAGCAAAGGAGTTTTACAATGCTEST: gi|208389055|gb|DC937388.1|DC937388
genomic: TTTTCTACTTAAATCGTCATCAAACAGAAGAATGGAAGGGCTGGATGCAGgtgtgcctag ... aaaatttcagGTCCTTTTCCTTATGTATCACTACTTCGAAGCAAAGGAGTTTTACAATGCT
EST: TTTTCTACTTAAATCGTCATCAAACAGAAGAATGGAAGGGCTGGATGCAG GTCCTTTTCCTTATGTACCACTACTTCGAAGCAAAGGAGTTTTACAATGCTEST: gi|100439772|gb|BY962100.1|BY962100
genomic: TTTTCTACTTAAATCGTCATCAAACAGAAGAATGGAAGGGCTGGATGCAGgtgtgcctag ... aaaatttcagGTCCTTTTCCTTATGTATCACTACTTCGAAGCAAAGGAGTTTTACAATGCT
EST: TTTTCTACTTAAATCGTCATCAAACAGAAGAATGGAAGGGCTGGATGCAG GTCCTTTTCCTTATGTATCACTACTTCGAAGCAAAGGAGTTTTACAATGCTEST: gi|100421353|gb|BY976167.1|BY976167
genomic: TTTTCTACTTAAATCGTCATCAAACAGAAGAATGGAAGGGCTGGATGCAGgtgtgcctag ... aaaatttcagGTCCTTTTCCTTATGTATCACTACTTCGAAGCAAAGGAGTTTTACAATGCT
EST: CAAACAGAAGAATGGAAGGGCTGGATGCAG GTCCTTTTCCTTATGTATCACTACTTCGAAGCAAAGGAGTTTTACAATGCTEST: gi|100444072|gb|BY963970.1|BY963970
genomic: CAAACAGAAGAATGGAAGGGCTGGATGCAGgtgtgcctag ... aaaatttcagGTCCTTTTCCTTATGTATCACTACTTCGAAGCAAAGGAGTTTTACAATGCT
EST: TTTTCTACTTAAATCGTCATCAAACAGAAGAATGGAAGGGCTGGATGCAG GTCCTTTTCCTTATGTATCACTACTTCGAAGCAAAGGAGTTTTACAATGCT
genomic: TTTTCTACTTAAATCGTCATCAAACAGAAGAATGGAAGGGCTGGATGCAGgtgtgcctag ... aaaatttcagGTCCTTTTCCTTATGTATCACTACTTCGAAGCAAAGGAGTTTTACAATGCT
gatttaacctgttcactgaatttataatgtattatttacttgtctaaaatttcagGTCCTTTTCCTTATGTATCACTACTTCGAAGCAAAGGAGTTTTACAATGCTATTCGGGTGTTCATTGCTGCCTACGTTTGGATGACGGGTTTTGGCAACT
gtctaaa putative branch site (score: 3)
tgaatttataatgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcgacttgtgaattgttaagaagaaagtttatcgttagttcgatgatttaacctgttcactgaatttataatgtattatttacttgtctaaaatttcagGTCCTTTTCCTTATGTATCACTACTTCGAAGCAAAGGAGTTTTACAATGCTATTCGGGTGTTCATTGCTGCCTACGTTTGGATGACGGGTTTTGGCAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC