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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactttcatcgtctaatgagcttgcctggccgactttttaatagtccgaagtttcatactgcatttcatactcagactaactttcattctcagtgttgtccttttgggcttacttgtggttattatcactttcaataattgtgtagcatatagattttttacatactctcatctactgcagGTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCG

Basic information

species Physcomitrella patens
transcript PP1S74_140V6.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208376489|gb|DC922520.1|DC922520
EST:     ACATGCGGCGTGCTNGTGGTGAAGGGAGAGAG                         GTTCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
genomic: ACATGCGGCGTGCTCGTGGTGAAGGGAGAGAGgtaactttca ... tctactgcagGTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
EST: gi|208364850|gb|DC957887.1|DC957887
EST:     GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAG                         GTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
genomic: GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAGgtaactttca ... tctactgcagGTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
EST: gi|208372243|gb|DC948046.1|DC948046
EST:     CCACTNGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAG                         GTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
genomic: CCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAGgtaactttca ... tctactgcagGTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
EST: gi|162162985|gb|FC338167.1|FC338167
EST:     GAGGATCTTCCCACTGGAACATGCGGCGTGCTTGTGGTGAAGGGAGAGAG                         GTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
genomic: GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAGgtaactttca ... tctactgcagGTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
EST: gi|208356591|gb|DC922381.1|DC922381
EST:     TGGAACATGCGGCGTGCTCGTGGTGAA-GGAGAGAG                         GTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
genomic: TGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAGgtaactttca ... tctactgcagGTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
EST: gi|208383807|gb|DC928082.1|DC928082
EST:     GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAG                         GTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
genomic: GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAGgtaactttca ... tctactgcagGTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
EST: gi|208386389|gb|DC937056.1|DC937056
EST:     GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAG                         GTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
genomic: GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAGgtaactttca ... tctactgcagGTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
EST: gi|208370737|gb|DC936859.1|DC936859
EST:     GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAG                         GTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
genomic: GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAGgtaactttca ... tctactgcagGTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
EST: gi|208372953|gb|DC940584.1|DC940584
EST:     GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAG                         GTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
genomic: GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAGgtaactttca ... tctactgcagGTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
EST: gi|208345159|gb|DC925457.1|DC925457
EST:     ACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAG                         GTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
genomic: ACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAGgtaactttca ... tctactgcagGTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
EST: gi|208391627|gb|DC938240.1|DC938240
EST:     GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAG                         GTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
genomic: GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAGgtaactttca ... tctactgcagGTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
EST: gi|208360344|gb|DC930753.1|DC930753
EST:     GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAG                         GTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
genomic: GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAGgtaactttca ... tctactgcagGTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
EST: gi|162175919|gb|FC351597.1|FC351597
EST:     GAGGATCTTCCCACTGGAACATGCGGCGTGCTTGTGGTGAAGGGAGAGAG                         GTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
genomic: GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAGgtaactttca ... tctactgcagGTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
EST: gi|162227965|gb|FC404585.1|FC404585
EST:     CTGGAACATGCGGCGTGCT-GTGGTGAAAGGGAGAGAG                         GTCCTTGGTAGCCAATCTTTCAG-CGNCCAACAAATACAAGATCGACCAC-
genomic: CTGGAACATGCGGCGTGCTCGTGGTG-AAGGGAGAGAGgtaactttca ... tctactgcagGTCCTTGGTAGCCAATCTTTCAGCCG-CCAACAAATACAAGATCGACCACT
EST: gi|208349412|gb|DC910429.1|DC910429
EST:     GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAG                         GTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
genomic: GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAGgtaactttca ... tctactgcagGTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
EST: gi|208376730|gb|DC902925.1|DC902925
EST:     GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAG                         GTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
genomic: GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAGgtaactttca ... tctactgcagGTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
EST: gi|208388767|gb|DC941776.1|DC941776
EST:     GAGGATCTTCTCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAG                         GTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
genomic: GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAGgtaactttca ... tctactgcagGTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
EST: gi|67704587|gb|BJ964820.1|BJ964820
EST:     GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAG                         GTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
genomic: GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAGgtaactttca ... tctactgcagGTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
EST: gi|37843958|gb|BJ601966.1|BJ601966
EST:     TGGTGAAGGGAGAGAG                         GTCCTTGGTAGCCAATNTTTCAGCCGCCAACAAATACAAGATCGACCACTT
genomic: TGGTGAAGGGAGAGAGgtaactttca ... tctactgcagGTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
EST: gi|208362330|gb|DC954576.1|DC954576
EST:     TCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAG                         GTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
genomic: TCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAGgtaactttca ... tctactgcagGTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
EST: gi|18326813|gb|BJ158813.1|BJ158813
EST:     GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAG                         GTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
genomic: GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAGgtaactttca ... tctactgcagGTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
EST: gi|208347730|gb|DC925603.1|DC925603
EST:     CTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAG                         GTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
genomic: CTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAGgtaactttca ... tctactgcagGTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
EST: gi|208400413|gb|DC908640.1|DC908640
EST:     GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAG                         GTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
genomic: GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAGgtaactttca ... tctactgcagGTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
EST: gi|18363954|gb|BJ196027.1|BJ196027
EST:     GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAG                         GTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCA
genomic: GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAGgtaactttca ... tctactgcagGTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCA
EST: gi|208354863|gb|DC934367.1|DC934367
EST:     GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAG                         GTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
genomic: GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAGgtaactttca ... tctactgcagGTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
EST: gi|162227966|gb|FC404586.1|FC404586
EST:     GAGGATCTTCCCACTGGAACATGCGGCGTGCTTGTGGTGAAGGGAGAGAG                         GTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
genomic: GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAGgtaactttca ... tctactgcagGTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
EST: gi|208386871|gb|DC941575.1|DC941575
EST:     GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAG                         GTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
genomic: GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAGgtaactttca ... tctactgcagGTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
EST: gi|208394555|gb|DC953594.1|DC953594
EST:     CCACTGGAACATGCGGCGTGTTCGTGGTGAAGGGAGAGAG                         GTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
genomic: CCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAGgtaactttca ... tctactgcagGTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
EST: gi|208374223|gb|DC945269.1|DC945269
EST:     CCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAG                         GTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
genomic: CCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAGgtaactttca ... tctactgcagGTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
EST: gi|100377120|gb|BY968373.1|BY968373
EST:     GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAG                         GTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
genomic: GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAGgtaactttca ... tctactgcagGTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
EST: gi|208356999|gb|DC930029.1|DC930029
EST:     GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAG                         GTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
genomic: GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAGgtaactttca ... tctactgcagGTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
EST: gi|162184644|gb|FC360842.1|FC360842
EST:     GAGGATCTTCCCACTGGAACATGCGGCGTGCTTGTGGTGAAGGGAGAGAG                         GTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
genomic: GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAGgtaactttca ... tctactgcagGTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
EST: gi|18361231|gb|BJ193296.1|BJ193296
EST:     GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAG                         GTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
genomic: GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAGgtaactttca ... tctactgcagGTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
EST: gi|208379780|gb|DC911665.1|DC911665
EST:     GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAG                         GTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
genomic: GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAGgtaactttca ... tctactgcagGTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
EST: gi|67718979|gb|BJ969238.1|BJ969238
EST:     GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAG                         GTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
genomic: GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAGgtaactttca ... tctactgcagGTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
EST: gi|67575908|gb|BJ948732.1|BJ948732
EST:     GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAG                         GTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
genomic: GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAGgtaactttca ... tctactgcagGTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
EST: gi|208395695|gb|DC911816.1|DC911816
EST:     GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAG                         GTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
genomic: GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAGgtaactttca ... tctactgcagGTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
EST: gi|100383558|gb|BY950342.1|BY950342
EST:     GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAG                         GTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
genomic: GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAGgtaactttca ... tctactgcagGTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
EST: gi|208398364|gb|DC912321.1|DC912321
EST:     GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAG                         GTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
genomic: GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAGgtaactttca ... tctactgcagGTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
EST: gi|208395850|gb|DC924260.1|DC924260
EST:     GCTCGTGGTGAA-GGAGAGAG                         GTCCTTGGTAGCCNATNTTTCAGCCGCCAACAAATACAAGATCGACCACTT
genomic: GCTCGTGGTGAAGGGAGAGAGgtaactttca ... tctactgcagGTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
EST: gi|208358332|gb|DC930717.1|DC930717
EST:     GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAG                         GTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
genomic: GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAGgtaactttca ... tctactgcagGTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
EST: gi|162160598|gb|FC337173.1|FC337173
EST:     GAGGATCTTCCCACTGGAACATGCGGCGTGCTTGTGGTGAAGGGAGAGAG                         GTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
genomic: GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAGgtaactttca ... tctactgcagGTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
EST: gi|18363048|gb|BJ195120.1|BJ195120
EST:     GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAG                         GTCCTTGGTAGCCAATCTTTCAGC
genomic: GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAGgtaactttca ... tctactgcagGTCCTTGGTAGCCAATCTTTCAGC
EST: gi|67727318|gb|BJ977577.1|BJ977577
EST:     CCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAG                         GTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
genomic: CCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAGgtaactttca ... tctactgcagGTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
EST: gi|208356504|gb|DC914338.1|DC914338
EST:     GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAG                         GTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
genomic: GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAGgtaactttca ... tctactgcagGTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
EST: gi|100426438|gb|BY958898.1|BY958898
EST:     GAGGATCTTCCCACTGGGACATGCGGCGTGCTCGTGGTGAAGGGAGAGAG                         GTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
genomic: GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAGgtaactttca ... tctactgcagGTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
EST: gi|208353472|gb|DC938707.1|DC938707
EST:     GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAG                         GTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
genomic: GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAGgtaactttca ... tctactgcagGTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
EST: gi|208347297|gb|DC925321.1|DC925321
EST:     GTGAAGGGAGAGAG                         GTCCTTGGTAGCCAATNTTTCAGCCGCCAACAAATACAAGATCGACCACTT
genomic: GTGAAGGGAGAGAGgtaactttca ... tctactgcagGTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
EST: gi|208394056|gb|DC957137.1|DC957137
EST:     GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAG                         GTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
genomic: GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAGgtaactttca ... tctactgcagGTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
EST: gi|100386323|gb|BY987990.1|BY987990
EST:     GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAG                         GTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
genomic: GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAGgtaactttca ... tctactgcagGTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
EST: gi|208399501|gb|DC908498.1|DC908498
EST:     GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAG                         GTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
genomic: GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAGgtaactttca ... tctactgcagGTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
EST: gi|208346565|gb|DC916831.1|DC916831
EST:     GAGGATNTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAG                         GTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
genomic: GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAGgtaactttca ... tctactgcagGTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
EST: gi|208355282|gb|DC929771.1|DC929771
EST:     GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAG                         GTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
genomic: GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAGgtaactttca ... tctactgcagGTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
EST: gi|208367374|gb|DC951292.1|DC951292
EST:     TGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAG                         GTCCNTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACN
genomic: TGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAGgtaactttca ... tctactgcagGTCC-TTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACT
EST: gi|100388054|gb|BY988527.1|BY988527
EST:     GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAG                         GTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
genomic: GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAGgtaactttca ... tctactgcagGTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
EST: gi|208390491|gb|DC933748.1|DC933748
EST:     GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAG                         GTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
genomic: GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAGgtaactttca ... tctactgcagGTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
EST: gi|208356213|gb|DC957331.1|DC957331
EST:     GAGGATCNTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAG                         GTCCTTGGTAGTCAATCTTTCAGCCGCCAACAAATACAAGATNGACCACTT
genomic: GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAGgtaactttca ... tctactgcagGTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
EST: gi|37845825|gb|BJ603833.1|BJ603833
EST:     AACATGCGGCGTGCTCGTGGTGAAGGGAGAGAG                         GTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
genomic: AACATGCGGCGTGCTCGTGGTGAAGGGAGAGAGgtaactttca ... tctactgcagGTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
EST: gi|100374167|gb|BY985695.1|BY985695
EST:     GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAG                         GTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
genomic: GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAGgtaactttca ... tctactgcagGTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
EST: gi|100429892|gb|BY978141.1|BY978141
EST:     GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAG                         GTCCTTGGTGGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
genomic: GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAGgtaactttca ... tctactgcagGTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
EST: gi|100366155|gb|BY967307.1|BY967307
EST:     AGGATCTTCC-ACTTGGA-CATGCGGCGTGCTCGTGGTGAAGGGAGAGAG                         GGCCTTGGTAGCCAATCTTTCAGCCGGCCA-CAAATACAAGATCGACCACT
genomic: AGGATCTTCCCACT-GGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAGgtaactttca ... tctactgcagGTCCTTGGTAGCCAATCTTTCAGCCG-CCAACAAATACAAGATCGACCACT
EST: gi|208383873|gb|DC911527.1|DC911527
EST:     GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAG                         GTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
genomic: GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAGgtaactttca ... tctactgcagGTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
EST: gi|208370618|gb|DC936134.1|DC936134
EST:     GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAG                         GTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
genomic: GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAGgtaactttca ... tctactgcagGTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
EST: gi|100370755|gb|BY948500.1|BY948500
EST:     GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAG                         GTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
genomic: GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAGgtaactttca ... tctactgcagGTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
EST: gi|208358299|gb|DC939411.1|DC939411
EST:     GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAG                         GTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
genomic: GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAGgtaactttca ... tctactgcagGTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
EST: gi|100379883|gb|BY949992.1|BY949992
EST:     GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAG                         GTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
genomic: GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAGgtaactttca ... tctactgcagGTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
EST: gi|208394240|gb|DC933908.1|DC933908
EST:     GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAG                         GTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT
genomic: GAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAGgtaactttca ... tctactgcagGTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 29 (downstream exon)
Score: 22

ATCCGATACGATGTGGACGAGGATCTTCCCACTGGAACATGCGGCGTGCTCGTGGTGAAGGGAGAGAGgtaactttca ... tctactgcagGTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cactttcaataattgtgtagcatatagattttttacatactctcatctactgcagGTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCG
                                       ctctcatct  CT-rich tract
                     atatagattttttaca  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaactttcatcgtctaatgagcttgcctggccgactttttaatagtccgaagtttcatactgcatttcatactcagactaactttcattctcagtgttgtccttttgggcttacttgtggttattatcactttcaataattgtgtagcatatagattttttacatactctcatctactgcagGTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC