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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tccatgttatttcatttttacatggcttgagatgattgagactcagctaactcggagatttcttgactcaatattgatgttcgacaatttgactacacagAATCGGTAGATCGGTAAAGAGCATGCAAGAGTTTGCGTCTCAGGGTGGTCGTCTTCTAGATGTTTTATCCAGTACTGGTGATTGGTCTGGCATAGTCTCG

Basic information

species Physcomitrella patens
transcript PP1S73_65V6.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162257931|gb|FC433817.1|FC433817
EST:     GTCTCTGTTCCTCCGTCCATGATTGTACGACGCCTTGCAGCTGCCATCGA                         AATCGGTAGATCGGTAAAGAGCATGCAAGAGTTTGCGTCTCAGGGTGGTCG
genomic: GTCTCTGTTCCTCCGTCCATGATTGTACGACGCCTTGCAGCTGCCATCGAgtaagagaaa ... gactacacagAATCGGTAGATCGGTAAAGAGCATGCAAGAGTTTGCGTCTCAGGGTGGTCG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctaactcggagatttcttgactcaatattgatgttcgacaatttgactacacagAATCGGTAGATCGGTAAAGAGCATGCAAGAGTTTGCGTCTCAGGGTGGTCGTCTTCTAGATGTTTTATCCAGTACTGGTGATTGGTCTGGCATAGTCTCG
                        aatattgat  TA-rich tract