1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaaggccgaagtcatatacattccattgcaccatgcaaactgatcttgttttgaaatattgaactagtgataaagaggcgatgcatttctgtggggcgttattcacgtctgcctcacaaagcaaaggatgcatgtaaaagacgtttcagtcgaatttactgttaataattttgttactctttccttgtggtgcagGCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCAAAGGTGTTTGAACGCCTTGGCAAGGACATTGCCTGGTCTTATTGGAGGAAGTG
species | Physcomitrella patens |
transcript | PP1S72_25V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AACAGCTGATTAGCTTGGAATTGCCAGCGGGCTGGGACACTTCTCTCCCT GCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCAAAGGEST: gi|162166276|gb|FC342869.1|FC342869
genomic: AACAGCTGATTAGCTTGGAATTGCCAGCGGGCTGGGACACTTCTCTCCCTgtaaggccga ... tgtggtgcagGCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCAAAGG
EST: AACAGCTGATTAGCTTGGAATTGCCAGCGGGCTGGGACACTTCTCTCCCT GCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCAAAGGEST: gi|162241293|gb|FC416924.1|FC416924
genomic: AACAGCTGATTAGCTTGGAATTGCCAGCGGGCTGGGACACTTCTCTCCCTgtaaggccga ... tgtggtgcagGCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCAAAGG
EST: AACAGCTGATTAGCTTGGAATTGCCAGCGGGCTGGGACACTTCTCTCCCT GCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCAAAGGEST: gi|162201261|gb|FC376780.1|FC376780
genomic: AACAGCTGATTAGCTTGGAATTGCCAGCGGGCTGGGACACTTCTCTCCCTgtaaggccga ... tgtggtgcagGCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCAAAGG
EST: TGGAATTGCCAGCGGGCTGGGACACTTCTCTCCCT GCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCAAAGGEST: gi|162258554|gb|FC434769.1|FC434769
genomic: TGGAATTGCCAGCGGGCTGGGACACTTCTCTCCCTgtaaggccga ... tgtggtgcagGCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCAAAGG
EST: AACAGCTGATTAGCTTGGAATTGCCAGCGGGCTGGGACACTTCTCTCCCT GGCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCAAAEST: gi|162162334|gb|FC339130.1|FC339130
genomic: AACAGCTGATTAGCTTGGAATTGCCAGCGGGCTGGGACACTTCTCTCCCTgtaaggccga ... tgtggtgcagGCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCAAA
EST: AACAGCTGATTAGCTTGGAATTGCCAGCGGGCTGGGACACTTCTCTCCCT GCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCEST: gi|162272679|gb|FC448305.1|FC448305
genomic: AACAGCTGATTAGCTTGGAATTGCCAGCGGGCTGGGACACTTCTCTCCCTgtaaggccga ... tgtggtgcagGCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTC
EST: AACAGCTGATTAGCTTGGAATTGCCAGCGGGCTGGGACACTTCTCTCCCT GCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCAAAGGEST: gi|162151356|gb|FC327485.1|FC327485
genomic: AACAGCTGATTAGCTTGGAATTGCCAGCGGGCTGGGACACTTCTCTCCCTgtaaggccga ... tgtggtgcagGCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCAAAGG
EST: AACAGCTGATTAGCTTGGAATTGCCAGCGGGCTGGGACACTTCTCTCCCT GCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCAAAGGEST: gi|162181737|gb|FC358767.1|FC358767
genomic: AACAGCTGATTAGCTTGGAATTGCCAGCGGGCTGGGACACTTCTCTCCCTgtaaggccga ... tgtggtgcagGCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCAAAGG
EST: GGGACACTTCTCTCCCT GCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCAAAGGEST: gi|162173575|gb|FC350149.1|FC350149
genomic: GGGACACTTCTCTCCCTgtaaggccga ... tgtggtgcagGCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCAAAGG
EST: AACAGCTGATTAGCTTGGAATTGCCAGCGGGCTGGGACACTTCTCTCCCT GCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCAAAGGEST: gi|162155491|gb|FC330974.1|FC330974
genomic: AACAGCTGATTAGCTTGGAATTGCCAGCGGGCTGGGACACTTCTCTCCCTgtaaggccga ... tgtggtgcagGCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCAAAGG
EST: AACAGCTGATTAGCTTGGAATTGCCAGCGGGCTGGGACACTTCTCTCCCT GCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCANAGGEST: gi|162154792|gb|FC331106.1|FC331106
genomic: AACAGCTGATTAGCTTGGAATTGCCAGCGGGCTGGGACACTTCTCTCCCTgtaaggccga ... tgtggtgcagGCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCAAAGG
EST: AACAGCTGATTAGCTTGGAATTGCCAGCGGGCTGGGACACTTCTCTCCCT GCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCAAAGGEST: gi|162153909|gb|FC329416.1|FC329416
genomic: AACAGCTGATTAGCTTGGAATTGCCAGCGGGCTGGGACACTTCTCTCCCTgtaaggccga ... tgtggtgcagGCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCAAAGG
EST: AACAGCTGATTAGCTTGGAATTGCCAGCGGGCTGGGACACTTCTCTCCCT GCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCAAAGGEST: gi|162231766|gb|FC408528.1|FC408528
genomic: AACAGCTGATTAGCTTGGAATTGCCAGCGGGCTGGGACACTTCTCTCCCTgtaaggccga ... tgtggtgcagGCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCAAAGG
EST: AACAGCTGATTAGCTTGGAATTGCCAGCGGGCTGGGACACTTCTCTCCCT GCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCAAAGGEST: gi|162157000|gb|FC333362.1|FC333362
genomic: AACAGCTGATTAGCTTGGAATTGCCAGCGGGCTGGGACACTTCTCTCCCTgtaaggccga ... tgtggtgcagGCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCAAAGG
EST: AACAGCTGATTAGCTTGGAATTGCCAGCGGGCTGGGACACTTCTCTCCCT GCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCAAAGGEST: gi|162186385|gb|FC362941.1|FC362941
genomic: AACAGCTGATTAGCTTGGAATTGCCAGCGGGCTGGGACACTTCTCTCCCTgtaaggccga ... tgtggtgcagGCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCAAAGG
EST: AACAGCTGATTAGCTTGGAATTGCCAGCGGGCTGGGACACTTCTCTCCCT GCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCAAAGGEST: gi|162160705|gb|FC337228.1|FC337228
genomic: AACAGCTGATTAGCTTGGAATTGCCAGCGGGCTGGGACACTTCTCTCCCTgtaaggccga ... tgtggtgcagGCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCAAAGG
EST: AACAGCTGATTAGCTTGGAATTGCCAGCGGGCTGGGACACTTCTCTCCCT GCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCAAAGGEST: gi|162193953|gb|FC371766.1|FC371766
genomic: AACAGCTGATTAGCTTGGAATTGCCAGCGGGCTGGGACACTTCTCTCCCTgtaaggccga ... tgtggtgcagGCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCAAAGG
EST: AACAGCTGATTAGCTTGGAATTGCCAGCGGGCTGGGACACTTCTCTCCCT GCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCAAAGGEST: gi|162166482|gb|FC343179.1|FC343179
genomic: AACAGCTGATTAGCTTGGAATTGCCAGCGGGCTGGGACACTTCTCTCCCTgtaaggccga ... tgtggtgcagGCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCAAAGG
EST: AACAGCTGATTAGCTTGGAATTGCCAGCGGGCTGGGACACTTCTCTCCCT GCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCAAAGGEST: gi|162254172|gb|FC429696.1|FC429696
genomic: AACAGCTGATTAGCTTGGAATTGCCAGCGGGCTGGGACACTTCTCTCCCTgtaaggccga ... tgtggtgcagGCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCAAAGG
EST: AACAGCTGATTAGCTTGGAATTGCCAGCGGGCTGGGACACTTCTCTCCCT GCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCAAAGGEST: gi|162181534|gb|FC358148.1|FC358148
genomic: AACAGCTGATTAGCTTGGAATTGCCAGCGGGCTGGGACACTTCTCTCCCTgtaaggccga ... tgtggtgcagGCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCAAAGG
EST: AACAGCTGATTAGCTTGGAATTGCCAGCGGGCTGGGACACTTCTCTCCCT GCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCAAAGGEST: gi|162195116|gb|FC368804.1|FC368804
genomic: AACAGCTGATTAGCTTGGAATTGCCAGCGGGCTGGGACACTTCTCTCCCTgtaaggccga ... tgtggtgcagGCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCAAAGG
EST: AACAGCTGATTAGCTTGGAATTGCCAGCGGGCTGGGACACTTCTCTCCCT GCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCAAAGGEST: gi|162268645|gb|FC443699.1|FC443699
genomic: AACAGCTGATTAGCTTGGAATTGCCAGCGGGCTGGGACACTTCTCTCCCTgtaaggccga ... tgtggtgcagGCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCAAAGG
EST: AACAGCTGATTAGCTTGGAATTGCCAGCGGGCTGGGACACTTCTCTCCCT GCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCAAAGGEST: gi|162248959|gb|FC421458.1|FC421458
genomic: AACAGCTGATTAGCTTGGAATTGCCAGCGGGCTGGGACACTTCTCTCCCTgtaaggccga ... tgtggtgcagGCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCAAAGG
EST: AACAGCTGATTAGCTTGGAATTGCCAGCGGGCTGGGACACTTCTCTCCCT GCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCANAGGEST: gi|162160911|gb|FC337468.1|FC337468
genomic: AACAGCTGATTAGCTTGGAATTGCCAGCGGGCTGGGACACTTCTCTCCCTgtaaggccga ... tgtggtgcagGCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCAAAGG
EST: AACAGCTGATTAGCTTGGAATTGCCAGCGGGCTGGGACACTTCTCTCCCT GCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCAAAGGEST: gi|162193760|gb|FC368700.1|FC368700
genomic: AACAGCTGATTAGCTTGGAATTGCCAGCGGGCTGGGACACTTCTCTCCCTgtaaggccga ... tgtggtgcagGCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCAAAGG
EST: AACAGCTGATTAGCTTGGAATTGCCAGCGGGCTGGGACACTTCTCTCCCT GCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCAAAGGEST: gi|162174042|gb|FC350557.1|FC350557
genomic: AACAGCTGATTAGCTTGGAATTGCCAGCGGGCTGGGACACTTCTCTCCCTgtaaggccga ... tgtggtgcagGCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCAAAGG
EST: AACAGCTGATTAGCTTGGAATTGCCAGCGGGCTGGGACACTTCTCTCCCT GCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCAAAGGEST: gi|162180307|gb|FC355312.1|FC355312
genomic: AACAGCTGATTAGCTTGGAATTGCCAGCGGGCTGGGACACTTCTCTCCCTgtaaggccga ... tgtggtgcagGCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCAAAGG
EST: AACAGCTGATTAGCTTGGAATTGCCAGCGGGCTGGGACACTTCTCTCCCT GCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCAAAGGEST: gi|162190600|gb|FC366238.1|FC366238
genomic: AACAGCTGATTAGCTTGGAATTGCCAGCGGGCTGGGACACTTCTCTCCCTgtaaggccga ... tgtggtgcagGCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCAAAGG
EST: AACAGCTGATTAGCTTGGAATTGCCAGCGGGCTGGGACACTTCTCTCCCT GCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCAAAGGEST: gi|162196635|gb|FC374925.1|FC374925
genomic: AACAGCTGATTAGCTTGGAATTGCCAGCGGGCTGGGACACTTCTCTCCCTgtaaggccga ... tgtggtgcagGCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCAAAGG
EST: AACAGCTGATTAGCTTGGAATTGCCAGCGGGCTGGGACACTTCTCTCCCT GCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCAAAGGEST: gi|162176957|gb|FC353634.1|FC353634
genomic: AACAGCTGATTAGCTTGGAATTGCCAGCGGGCTGGGACACTTCTCTCCCTgtaaggccga ... tgtggtgcagGCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCAAAGG
EST: AACAGCTGATTAGCTTGGAATTGCCAGCGGGCTGGGACACTTCTCTCCCT GCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCAAAGGEST: gi|162171616|gb|FC347557.1|FC347557
genomic: AACAGCTGATTAGCTTGGAATTGCCAGCGGGCTGGGACACTTCTCTCCCTgtaaggccga ... tgtggtgcagGCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCAAAGG
EST: AACAGCTGATTAGCTTGGAATTGCCAGCGGGCTGGGACACTTCTCTCCCT GCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCAAAGGEST: gi|162161260|gb|FC337323.1|FC337323
genomic: AACAGCTGATTAGCTTGGAATTGCCAGCGGGCTGGGACACTTCTCTCCCTgtaaggccga ... tgtggtgcagGCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCAAAGG
EST: AACAGCTGATTAGCTTGGAATTGCCAGCGGGCTGGGACACTTCTCTCCCT GCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCAAAGGEST: gi|162185533|gb|FC361257.1|FC361257
genomic: AACAGCTGATTAGCTTGGAATTGCCAGCGGGCTGGGACACTTCTCTCCCTgtaaggccga ... tgtggtgcagGCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCAAAGG
EST: AACAGCTGATTAGCTTGGAATTGCCAGCGGGCTGGGACACTTCTCTCCCT GCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCAAAGGEST: gi|162155489|gb|FC330972.1|FC330972
genomic: AACAGCTGATTAGCTTGGAATTGCCAGCGGGCTGGGACACTTCTCTCCCTgtaaggccga ... tgtggtgcagGCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCAAAGG
EST: AACAGCTGATTAGCTTGGAATTGCCAGCGGGCTGGGACACTTCTCTCCCT GCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCAAAGGEST: gi|162177841|gb|FC355091.1|FC355091
genomic: AACAGCTGATTAGCTTGGAATTGCCAGCGGGCTGGGACACTTCTCTCCCTgtaaggccga ... tgtggtgcagGCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCAAAGG
EST: AACAGCTGATTAGCTTGGAATTGCCAGCGGGCTGGGACACTTCTCTCCCT GCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCAAAGGEST: gi|162173510|gb|FC350084.1|FC350084
genomic: AACAGCTGATTAGCTTGGAATTGCCAGCGGGCTGGGACACTTCTCTCCCTgtaaggccga ... tgtggtgcagGCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCAAAGG
EST: AACAGCTGATTAGCTTGGAATTGCCAGCGGGCTGGGACACTTCTCTCCCT GCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCACAGGEST: gi|162167290|gb|FC342278.1|FC342278
genomic: AACAGCTGATTAGCTTGGAATTGCCAGCGGGCTGGGACACTTCTCTCCCTgtaaggccga ... tgtggtgcagGCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCAAAGG
EST: AACAGCTGATTAGCTTGGAATTGCCAGCGGGCTGGGACACTTCTCTCCCT GCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCAAAGG
genomic: AACAGCTGATTAGCTTGGAATTGCCAGCGGGCTGGGACACTTCTCTCCCTgtaaggccga ... tgtggtgcagGCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCAAAGG
acgtttcagtcgaatttactgttaataattttgttactctttccttgtggtgcagGCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCAAAGGTGTTTGAACGCCTTGGCAAGGACATTGCCTGGTCTTATTGGAGGAAGTG
tgttaat putative branch site (score: 119)
ttttgttactctttcc putative PPT
aatttactgttaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggccgaagtcatatacattccattgcaccatgcaaactgatcttgttttgaaatattgaactagtgataaagaggcgatgcatttctgtggggcgttattcacgtctgcctcacaaagcaaaggatgcatgtaaaagacgtttcagtcgaatttactgttaataattttgttactctttccttgtggtgcagGCCTTCACCCCTGAAGACGCTGGCGATGCTACCCGTAACTTGTCTCAAAGGTGTTTGAACGCCTTGGCAAGGACATTGCCTGGTCTTATTGGAGGAAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA