1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagtaggctctctttaattatatgagaaaagttcttcaaaggaagagtatttcaatgtagtcaaagattttgtgtttaatatggttattagcattaattatggtttgtgaccgttgaattggctgcctctggtagttatttttttctaattgcttacatattgcgagtgcagCGCCTCCTGAACAGATGTACGCCTCGCAGCTGTCTCAGTTGCAAGAAATGGGATTTTTTGATACTCAGGAGAATATTCGGGCACTTAGTGCTGTGGGTGG
species | Physcomitrella patens |
transcript | PP1S70_281V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ACTCAATATGTTTGGAAGTCTTGGCAGCACCGCTCCTTCCAACCCTGATG CGCCTCCTGAACAGATGTACGCCTCGCAGCTGTCTCAGTTGCAAGCAATGGEST: gi|67728027|gb|BJ978286.1|BJ978286
genomic: ACTCAATATGTTTGGAAGTCTTGGCAGCACCGCTCCTTCCAACCCTGATGgtaagtaggc ... gcgagtgcagCGCCTCCTGAACAGATGTACGCCTCGCAGCTGTCTCAGTTGCAAGAAATGG
EST: ACTCAATATGTTTGGAAGTCTTGGCAGCACCGCTCCTTCCAACCCTGATG CGCCTCCTGAACAGATGTACGCCTCGCAGCTGTCTCAGTTGCAAGAAATGGEST: gi|162185317|gb|FC360891.1|FC360891
genomic: ACTCAATATGTTTGGAAGTCTTGGCAGCACCGCTCCTTCCAACCCTGATGgtaagtaggc ... gcgagtgcagCGCCTCCTGAACAGATGTACGCCTCGCAGCTGTCTCAGTTGCAAGAAATGG
EST: ACTCAATATGTTTGGAAGTCTTGGCAGCACCGCTCCTTCCAACCCTGATG CGCCTCCTGAACAGATGTACGCCTCGCAGCTGTCTCAGTTGCAAGCAATGGEST: gi|162177288|gb|FC353445.1|FC353445
genomic: ACTCAATATGTTTGGAAGTCTTGGCAGCACCGCTCCTTCCAACCCTGATGgtaagtaggc ... gcgagtgcagCGCCTCCTGAACAGATGTACGCCTCGCAGCTGTCTCAGTTGCAAGAAATGG
EST: ACTCAATATGTTTGGAAGTCTTGGCAGCACCGCTCCTTCCAACCCTGATG CGCCTCCTGAACAGATGTACGCCTCGCAGCTGTCTCAGTTGCAAGCAATGGEST: gi|37840865|gb|BJ598873.1|BJ598873
genomic: ACTCAATATGTTTGGAAGTCTTGGCAGCACCGCTCCTTCCAACCCTGATGgtaagtaggc ... gcgagtgcagCGCCTCCTGAACAGATGTACGCCTCGCAGCTGTCTCAGTTGCAAGAAATGG
EST: ACTCAATATGTTTGGAAGTCTTGGCAGCACCGCTCCTTCCAACCCTGATG CGCCTCCTGAACAGATGTACGCCTCGCAGCTGTCTCAGTTGCAAGAAATGGEST: gi|208374329|gb|DC948389.1|DC948389
genomic: ACTCAATATGTTTGGAAGTCTTGGCAGCACCGCTCCTTCCAACCCTGATGgtaagtaggc ... gcgagtgcagCGCCTCCTGAACAGATGTACGCCTCGCAGCTGTCTCAGTTGCAAGAAATGG
EST: ACTCAATATGTTTGGAAGTCTTGGCAGCACCGCTCCTTCCAACCCTGATG CGCCTCCTGAACAGATGTACGCCTCGCAGCTGTCTCAGTTGCAAGAAATGGEST: gi|37833074|gb|BJ591086.1|BJ591086
genomic: ACTCAATATGTTTGGAAGTCTTGGCAGCACCGCTCCTTCCAACCCTGATGgtaagtaggc ... gcgagtgcagCGCCTCCTGAACAGATGTACGCCTCGCAGCTGTCTCAGTTGCAAGAAATGG
EST: ACTCAATATGTTTGGAAGTCTTGGCAGCACCGCTCCTTCCAACCCTGATG CGCCTCCTGAACAGATGTACGCCTCGCAGCTGTCTCAGTTGCAAGAAATGGEST: gi|37830569|gb|BJ588581.1|BJ588581
genomic: ACTCAATATGTTTGGAAGTCTTGGCAGCACCGCTCCTTCCAACCCTGATGgtaagtaggc ... gcgagtgcagCGCCTCCTGAACAGATGTACGCCTCGCAGCTGTCTCAGTTGCAAGAAATGG
EST: ACTCAATATGTTTGGAAGTCTTGGCAGCACCGCTCCTTCCAACCCTGATG CGCCTCCTGAACAGATGTACGCCTCGCAGCTGTCTCAGTTGCAAGAAATGG
genomic: ACTCAATATGTTTGGAAGTCTTGGCAGCACCGCTCCTTCCAACCCTGATGgtaagtaggc ... gcgagtgcagCGCCTCCTGAACAGATGTACGCCTCGCAGCTGTCTCAGTTGCAAGAAATGG
attggctgcctctggtagttatttttttctaattgcttacatattgcgagtgcagCGCCTCCTGAACAGATGTACGCCTCGCAGCTGTCTCAGTTGCAAGAAATGGGATTTTTTGATACTCAGGAGAATATTCGGGCACTTAGTGCTGTGGGTGG
tgcttac putative branch site (score: 7)
ttatttttttctaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtaggctctctttaattatatgagaaaagttcttcaaaggaagagtatttcaatgtagtcaaagattttgtgtttaatatggttattagcattaattatggtttgtgaccgttgaattggctgcctctggtagttatttttttctaattgcttacatattgcgagtgcagCGCCTCCTGAACAGATGTACGCCTCGCAGCTGTCTCAGTTGCAAGAAATGGGATTTTTTGATACTCAGGAGAATATTCGGGCACTTAGTGCTGTGGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA