1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgagtgaatttataactcttcatattcttggccatgtgttgttaggttcttcacaatgggcacaattatgtcgacatcaccagtagagccgtttcttattatcttcaaatcgtataaatgaacagtaagggtgtatggccggtgtgtggtgtaggctacgcagGGTGTACCTTCGCCTGAGGATTAACAGAAGTTCGGAGCTCAAAACCATGGTTTCAAATCTTAGAAGTTATATTTTAGGATGCAGAAAGAAGTGAGATTGA
species | Physcomitrella patens |
transcript | PP1S6_62V6.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTACAATTGCTACTTCAACGGCACCGCCATCATCAGTAACAGCGATCCAAGCTACGCAEST: gi|37820960|gb|BJ579026.1|BJ579026
genomic: TTACAATTGCTACTTCAACGGCACCGCCATCATCAGTAACAGCGAT-C---C-A---Agtgagtgaat ... ggc
EST: TTACAATTGCTACTTCAACGGCACCGCCATCATCAGTAACAGCGATCCAAGCTACGCAEST: gi|208351441|gb|DC921608.1|DC921608
genomic: TTACAATTGCTACTTCAACGGCACCGCCATCATCAGTAACAGCGAT-C---C-A---Agtgagtgaat ... ggc
EST: TTACAATTGCTACTTCAACGGCACCGCCATCATCAGTAACAGCGATCCAA GCTACGCAGGGTGTACCTTCGCCTGAGGATTAACAGAAGTTCGGAGCTCAAEST: gi|37822412|gb|BJ580478.1|BJ580478
genomic: TTACAATTGCTACTTCAACGGCACCGCCATCATCAGTAACAGCGATCCAAgtgagtgaat ... ggctacgcagG----G-----TGTACCTTCGCCTGAGGATTAACAGAAGTTCGGAGCTCAA
EST: TTACAATTGCTACTTCAACGGCACCGCCATCATCAGTAACAGCGATCCAA GGTGTACCTTCGCCTGAGGATTAACAGAAGTTCGGAGCTCAAAACCATGGTEST: gi|37826365|gb|BJ584377.1|BJ584377
genomic: TTACAATTGCTACTTCAACGGCACCGCCATCATCAGTAACAGCGATCCAAgtgagtgaat ... ggctacgcagGGTGTACCTTCGCCTGAGGATTAACAGAAGTTCGGAGCTCAAAACCATGGT
EST: TTACAATTGCTACTTCAACGGCACCGCCATCATCAGTAACAGCGATCCAAGCTACGCAEST: gi|37826365|gb|BJ584377.1|BJ584377
genomic: TTACAATTGCTACTTCAACGGCACCGCCATCATCAGTAACAGCGAT-C---C-A---Agtgagtgaat ... ggc
EST: TTACAATTGCTACTTCAACGGCACCGCCATCATCAGTAACAGCGATCCAAGCTACGCAEST: gi|37832439|gb|BJ590451.1|BJ590451
genomic: TTACAATTGCTACTTCAACGGCACCGCCATCATCAGTAACAGCGAT-C---C-A---Agtgagtgaat ... ggc
EST: TTACAATTGCTACTTCAACGGCACCGCCATCATCAGTAACAGCGATCCAAGCTACGCAEST: gi|37832439|gb|BJ590451.1|BJ590451
genomic: TTACAATTGCTACTTCAACGGCACCGCCATCATCAGTAACAGCGAT-C---C-A---Agtgagtgaat ... ggc
EST: TTACAATTGCTACTTCAACGGCACCGCCATCATCAGTAACAGCGATCCAAGCTACGCAEST: gi|18339860|gb|BJ171887.1|BJ171887
genomic: TTACAATTGCTACTTCAACGGCACCGCCATCATCAGTAACAGCGAT-C---C-A---Agtgagtgaat ... ggc
EST: TTACAATTGCTACTTCAACGGCACCGCCATCATCAGTAACAGCGATCCAAGCTACGCAEST: gi|18339860|gb|BJ171887.1|BJ171887
genomic: TTACAATTGCTACTTCAACGGCACCGCCATCATCAGTAACAGCGAT-C---C-A---Agtgagtgaat ... ggc
EST: TTACAATTGCTACTTCAACGGCACCGCCATCATCAGTAACAGCGATCCAAGCTACGCAEST: gi|37838569|gb|BJ596577.1|BJ596577
genomic: TTACAATTGCTACTTCAACGGCACCGCCATCATCAGTAACAGCGAT-C---C-A---Agtgagtgaat ... ggc
EST: TTACAATTGCTACTTCAACGGCACCGCCATCATCAGTAACAGCGATCCAAGCTACGCAEST: gi|37838569|gb|BJ596577.1|BJ596577
genomic: TTACAATTGCTACTTCAACGGCACCGCCATCATCAGTAACAGCGAT-C---C-A---Agtgagtgaat ... ggc
EST: TTACAATTGCTACTTCAACGGCACCGCCATCATCAGTAACAGCGATCCAAGCTACGCA
genomic: TTACAATTGCTACTTCAACGGCACCGCCATCATCAGTAACAGCGAT-C---C-A---Agtgagtgaat ... ggc
atcgtataaatgaacagtaagggtgtatggccggtgtgtggtgtaggctacgcagGGTGTACCTTCGCCTGAGGATTAACAGAAGTTCGGAGCTCAAAACCATGGTTTCAAATCTTAGAAGTTATATTTTAGGATGCAGAAAGAAGTGAGATTGA
ataaatgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtgaatttataactcttcatattcttggccatgtgttgttaggttcttcacaatgggcacaattatgtcgacatcaccagtagagccgtttcttattatcttcaaatcgtataaatgaacagtaagggtgtatggccggtgtgtggtgtaggctacgcagGGTGTACCTTCGCCTGAGGATTAACAGAAGTTCGGAGCTCAAAACCATGGTTTCAAATCTTAGAAGTTATATTTTAGGATGCAGAAAGAAGTGAGATTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
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