1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tgcttgataacacaaaaatggatcatttcgtcatctcaacagtcagatgcgcacgatgttgttttaatcatgtggggtgtgtctttctttggaaatgcagCAACACGAACTTTCAAGTTCCAGTGGTCAGCTTAGCTTTGTCAGGCGGGAACTCTTTGGATGTCGTCAGTGGTCTGAAGAGCATCGTCGACGAT
species | Physcomitrella patens |
transcript | PP1S6_43V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAGTGGAATGATCCCAGATTCAGCAAATGGGATCTCTGCTACCAGACGAG CAACACGAACTTTCAAGTTCCAGTGGTCAGCTTAGCTTTGTCAGGCGGGAAEST: gi|100353277|gb|BY964725.1|BY964725
genomic: AAGTGGAATGATCCCAGATTCAGCAAATGGGATCTCTGCTACCAGACGAGgtttgtatcc ... ggaaatgcagCAACACGAACTTTCAAGTTCCAGTGGTCAGCTTAGCTTTGTCAGGCGGGAA
EST: AAGTGGAATGATCCCAGATTCAGCAAATGGGATCTCTGCTACCAGACGAG CAACACGAACTTTCAAGTTCCAGTGGTCAGCTTAGCTTTGTCAGGCGGGAA
genomic: AAGTGGAATGATCCCAGATTCAGCAAATGGGATCTCTGCTACCAGACGAGgtttgtatcc ... ggaaatgcagCAACACGAACTTTCAAGTTCCAGTGGTCAGCTTAGCTTTGTCAGGCGGGAA
gatgcgcacgatgttgttttaatcatgtggggtgtgtctttctttggaaatgcagCAACACGAACTTTCAAGTTCCAGTGGTCAGCTTAGCTTTGTCAGGCGGGAACTCTTTGGATGTCGTCAGTGGTCTGAAGAGCATCGTCGACGAT
ttttaat putative branch site (score: 1)
tctttctttg putative PPT
ttgttttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcttgataacacaaaaatggatcatttcgtcatctcaacagtcagatgcgcacgatgttgttttaatcatgtggggtgtgtctttctttggaaatgcagCAACACGAACTTTCAAGTTCCAGTGGTCAGCTTAGCTTTGTCAGGCGGGAACTCTTTGGATGTCGTCAGTGGTCTGAAGAGCATCGTCGACGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - -cagatgc