1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagttcatcctcagattgcaagtgataaatactttgcaggagacggattaggagcattcctagacctttaagcttttagttcaaaatgtagacacaatttgctgatttatcctagcagaatagttatttcttctaatttttgattctttcggctttgtccgtgcttgttgatggctgtgtgatcacagGGACATAACAGGACTGAACGACAGGGAGGTGGCATGCTACACCATTTCATGCAAAAACTGTACTAACATTGACATCGTGATCGACTGGCTAGTGAAGCAC
species | Physcomitrella patens |
transcript | PP1S6_409V6.3 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAAATCGACAAGCCTGAGGCTATCTCAAAGCAGGCTCTTATTGATCAAAT GGACATAACAGGACTGAACGACAGGGAGGTGGCATGCTACACCATTTCATGEST: gi|208364105|gb|DC950397.1|DC950397
genomic: AAAATCGACAAGCCTGAGGCTATCTCAAAGCAGGCTCTTATTGATCAAATgtaagttcat ... gtgatcacagGGACATAACAGGACTGAACGACAGGGAGGTGGCATGCTACACCATTTCATG
EST: AAAATCGACAAGCCTGAGGCTATCTCAAAGCAGGCTCTTATTGATCAAAT GGACATAACAGGACTGAACGACAGGGAGGTGGCATGCTACACCATTTCATGEST: gi|208382259|gb|DC919247.1|DC919247
genomic: AAAATCGACAAGCCTGAGGCTATCTCAAAGCAGGCTCTTATTGATCAAATgtaagttcat ... gtgatcacagGGACATAACAGGACTGAACGACAGGGAGGTGGCATGCTACACCATTTCATG
EST: AAAATCGACAAGCCTGAGGCTATCTCAAAGCAGGCTCTTATTGATCAAAT GGACATAACAGGACTGAACGACAGGGAGGTGGCATGCTACACCATTTCATGEST: gi|162237116|gb|FC413275.1|FC413275
genomic: AAAATCGACAAGCCTGAGGCTATCTCAAAGCAGGCTCTTATTGATCAAATgtaagttcat ... gtgatcacagGGACATAACAGGACTGAACGACAGGGAGGTGGCATGCTACACCATTTCATG
EST: AAAATCGACAAGCCTGAGGCTATCTCAAAGCAGGCTCTTATTGATCAAAT GGACATAACAGGACTGAACGACAGGGAGGTGGCATGCTACACCATTTCATGEST: gi|6167350|gb|AW145614.1|AW145614
genomic: AAAATCGACAAGCCTGAGGCTATCTCAAAGCAGGCTCTTATTGATCAAATgtaagttcat ... gtgatcacagGGACATAACAGGACTGAACGACAGGGAGGTGGCATGCTACACCATTTCATG
EST: GCTATCTCAAAGCAGGCTCTTATTGATCAAAT GGACATAACAGGACTGAACGACAGGNAGGTGGCATGCTACACCATTTCATGEST: gi|162237115|gb|FC413274.1|FC413274
genomic: GCTATCTCAAAGCAGGCTCTTATTGATCAAATgtaagttcat ... gtgatcacagGGACATAACAGGACTGAACGACAGGGAGGTGGCATGCTACACCATTTCATG
EST: AAAATCGACAAGCCTGAGGCTATCTCAAAGCAGGCTCTTATTGATCAAAT GGACATAACAGGACTGAACGACAGGGAGGTGGCATGCTACACCATTTCATGEST: gi|208368100|gb|DC947660.1|DC947660
genomic: AAAATCGACAAGCCTGAGGCTATCTCAAAGCAGGCTCTTATTGATCAAATgtaagttcat ... gtgatcacagGGACATAACAGGACTGAACGACAGGGAGGTGGCATGCTACACCATTTCATG
EST: AAAATCGACAAGCCTGAGGCTATCTCAAAGCAGGCTCTTATTGATCAAAT GGACATAACAGGACTGAACGACAGGGAGGTGGCATGCTACACCATTTCATGEST: gi|162264751|gb|FC440318.1|FC440318
genomic: AAAATCGACAAGCCTGAGGCTATCTCAAAGCAGGCTCTTATTGATCAAATgtaagttcat ... gtgatcacagGGACATAACAGGACTGAACGACAGGGAGGTGGCATGCTACACCATTTCATG
EST: AAAATCGACAAGCCTGAGGCTATCTCAAAGCAGGCTCTTATTGATCAAAT GGACATAACAGGACTGAACGACAGGGAGGTGGCATGCTACACCATTTCATGEST: gi|162264752|gb|FC440319.1|FC440319
genomic: AAAATCGACAAGCCTGAGGCTATCTCAAAGCAGGCTCTTATTGATCAAATgtaagttcat ... gtgatcacagGGACATAACAGGACTGAACGACAGGGAGGTGGCATGCTACACCATTTCATG
EST: AAAATCGACAAGCCTGAGGCTATCTCAAAGCAAGCTCTTATTGATCAAAT GGACATAACAGGACTGAACGACAGGGAGGTGGCATGCTACACCATTTCATGEST: gi|208374248|gb|DC945294.1|DC945294
genomic: AAAATCGACAAGCCTGAGGCTATCTCAAAGCAGGCTCTTATTGATCAAATgtaagttcat ... gtgatcacagGGACATAACAGGACTGAACGACAGGGAGGTGGCATGCTACACCATTTCATG
EST: AAAATCGACAAGCCTGAGGCTATCTCAAAGCAGGCTCTTATTGATCAAAT GGACATAACAGGACTGAACGACAGGGAGGTGGCATGCTACACCATTTCATGEST: gi|162203520|gb|FC380436.1|FC380436
genomic: AAAATCGACAAGCCTGAGGCTATCTCAAAGCAGGCTCTTATTGATCAAATgtaagttcat ... gtgatcacagGGACATAACAGGACTGAACGACAGGGAGGTGGCATGCTACACCATTTCATG
EST: AAAATCGACAAGCCTGAGGCTATCTCAAAGCAGGCTCTTATTGATCAAAT GGACATAACAGGACTGAACGACAGGGAGGTGGCATGCTACACCATTTCATG
genomic: AAAATCGACAAGCCTGAGGCTATCTCAAAGCAGGCTCTTATTGATCAAATgtaagttcat ... gtgatcacagGGACATAACAGGACTGAACGACAGGGAGGTGGCATGCTACACCATTTCATG
taatttttgattctttcggctttgtccgtgcttgttgatggctgtgtgatcacagGGACATAACAGGACTGAACGACAGGGAGGTGGCATGCTACACCATTTCATGCAAAAACTGTACTAACATTGACATCGTGATCGACTGGCTAGTGAAGCAC
tttgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttcatcctcagattgcaagtgataaatactttgcaggagacggattaggagcattcctagacctttaagcttttagttcaaaatgtagacacaatttgctgatttatcctagcagaatagttatttcttctaatttttgattctttcggctttgtccgtgcttgttgatggctgtgtgatcacagGGACATAACAGGACTGAACGACAGGGAGGTGGCATGCTACACCATTTCATGCAAAAACTGTACTAACATTGACATCGTGATCGACTGGCTAGTGAAGCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC