1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...acctcgaaatgggaattccgtagttttcctgagggatggtttctttttctatgtggctcctttgttgacagtggttgcctgtcgtccatttgtattgcagGTATGTAGTGGAGAATAAAGTGTTACTTGGCGCCCTTCGTTCCCGTATTGAG
species | Physcomitrella patens |
transcript | PP1S6_302V6.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTTGGGTACACTCGTTACACTGCTGACGACGTCGGTGCATATGTACTAGG GTATGTAGTGGAGAATAAAGTGTTACTTGGCGCCCTTCGTTCCCGTATTGAEST: gi|208364237|gb|DC935508.1|DC935508
genomic: CTTGGGTACACTCGTTACACTGCTGACGACGTCGGTGCATATGTACTAGGgtgggtgcat ... tgtattgcagGTATGTAGTGGAGAATAAAGTGTTACTTGGCGCCCTTCGTTCCCGTATTGA
EST: CTTGGGTACACTCGTTACACTGCTGACGACGTCGGTGCATATGTACTAGG GTATGTAGTGGAGAATAAAGTGTTACTTGGCGCCCTTCGTTCCCGTATTGAEST: gi|100426269|gb|BY958812.1|BY958812
genomic: CTTGGGTACACTCGTTACACTGCTGACGACGTCGGTGCATATGTACTAGGgtgggtgcat ... tgtattgcagGTATGTAGTGGAGAATAAAGTGTTACTTGGCGCCCTTCGTTCCCGTATTGA
EST: CTTGGGTACACTCGTTACACTGCTGACGACGTCGGTGCATATGTACTAGG GTATGTAGTGGAGAATAAAGTGTTACTTGGCGCCCTTCGTTCCCGTATTGAEST: gi|208380026|gb|DC914576.1|DC914576
genomic: CTTGGGTACACTCGTTACACTGCTGACGACGTCGGTGCATATGTACTAGGgtgggtgcat ... tgtattgcagGTATGTAGTGGAGAATAAAGTGTTACTTGGCGCCCTTCGTTCCCGTATTGA
EST: CTTGGGTACACTCGTTACACTGCTGACGACGTCGGTGCATATGTACTAGG GTATGTAGTGGAGAATAAAGTGTTACTTGGCGCCCTTCGTTCCCGTATTGAEST: gi|100417753|gb|BY975636.1|BY975636
genomic: CTTGGGTACACTCGTTACACTGCTGACGACGTCGGTGCATATGTACTAGGgtgggtgcat ... tgtattgcagGTATGTAGTGGAGAATAAAGTGTTACTTGGCGCCCTTCGTTCCCGTATTGA
EST: CTTGGGTACACTCGTTACACTGCTGACGACGTCGGTGCATATGTACTAGG GTATGTAGTGGAGAATAAAGTGTTACTTGGCGCCCTTCGTTCCCGTATTGA
genomic: CTTGGGTACACTCGTTACACTGCTGACGACGTCGGTGCATATGTACTAGGgtgggtgcat ... tgtattgcagGTATGTAGTGGAGAATAAAGTGTTACTTGGCGCCCTTCGTTCCCGTATTGA
tttctatgtggctcctttgttgacagtggttgcctgtcgtccatttgtattgcagGTATGTAGTGGAGAATAAAGTGTTACTTGGCGCCCTTCGTTCCCGTATTGAG
tgttgac putative branch site (score: 3)
tccattt putative PPT
atttgtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acctcgaaatgggaattccgtagttttcctgagggatggtttctttttctatgtggctcctttgttgacagtggttgcctgtcgtccatttgtattgcagGTATGTAGTGGAGAATAAAGTGTTACTTGGCGCCCTTCGTTCCCGTATTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA