1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ggctttttatgtcgcgaagtgttagaaattgtaggtctcacgaagatgttaaaaaatggtctcgagatgctaatatatggtgattttatgcatgtggcagAGTTTTGCTGGATACCAAATTTAGGCGCTTGCCTGTTGTTGATCAGGATGGTAAATTG
species | Physcomitrella patens |
transcript | PP1S69_45V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CCATCACCCCTCGTTGTTCGTAAACAAACCAACCTTGAAGATGCAGCAAA AGTTTTGCTGGATACCAAATTTAGGCGCTTGCCTGTTGTTGATCAGGATGEST: gi|162230980|gb|FC407235.1|FC407235
genomic: CCATCACCCCTCGTTGTTCGTAAACAAACCAACCTTGAAGATGCAGCAAAgtaagctatt ... catgtggcagAGTTTTGCTGGATACCAAATTTAGGCGCTTGCCTGTTGTTGATCAGGATG
EST: CCATCACCCCTCGTTGTTCGTAAACAAACCAACCTTGAAGATGCAGCAAA AGTTTTGCTGGATACCAAATTTAGGCGCTTGCCTGTTGTTGATCAGGATGGEST: gi|67699794|gb|BJ960027.1|BJ960027
genomic: CCATCACCCCTCGTTGTTCGTAAACAAACCAACCTTGAAGATGCAGCAAAgtaagctatt ... catgtggcagAGTTTTGCTGGATACCAAATTTAGGCGCTTGCCTGTTGTTGATCAGGATGG
EST: CCATCACCCCTCGTTGTTCGTAAACAAACCAACCTTGAAGATGCAGCAAA AGTTTTGCTGGATACCAAATTTAGGCGCTTGCCTGTTGTTGATCAGGATGGEST: gi|162229777|gb|FC405179.1|FC405179
genomic: CCATCACCCCTCGTTGTTCGTAAACAAACCAACCTTGAAGATGCAGCAAAgtaagctatt ... catgtggcagAGTTTTGCTGGATACCAAATTTAGGCGCTTGCCTGTTGTTGATCAGGATGG
EST: CCATCACCCCTCGTTGTTCGTAAACAAACCAACCTTGAAGATGCAGCAAA AGTTTTGCTGGATACCAAATTTAGGCGCTTGCCTGTTGTTGATCAGGATGG
genomic: CCATCACCCCTCGTTGTTCGTAAACAAACCAACCTTGAAGATGCAGCAAAgtaagctatt ... catgtggcagAGTTTTGCTGGATACCAAATTTAGGCGCTTGCCTGTTGTTGATCAGGATGG
atgttaaaaaatggtctcgagatgctaatatatggtgattttatgcatgtggcagAGTTTTGCTGGATACCAAATTTAGGCGCTTGCCTGTTGTTGATCAGGATGGTAAATTG
tgctaat putative branch site (score: 14)
taatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggctttttatgtcgcgaagtgttagaaattgtaggtctcacgaagatgttaaaaaatggtctcgagatgctaatatatggtgattttatgcatgtggcagAGTTTTGCTGGATACCAAATTTAGGCGCTTGCCTGTTGTTGATCAGGATGGTAAATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG