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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagggtttaaaagcggcagcattctttgtgactgaagtgatttctcgcaatctgcgtaaaccactggcatttctgttgggcgtctgtggcgctaagtcttatccgctgtttgcttaatgtgcagGCGTTAAATACAGATAAATATAACGCTTATATGTTGCAACAGCACCAGTTTATACTTCAACAGCAACAGCAGCACCTTCACCAACAACCGCAGCAACATC

Basic information

species Physcomitrella patens
transcript PP1S69_37V6.2
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162188453|gb|FC365051.1|FC365051
EST:     ATTTCAATACTTACACAGCTCATCAGCATCAGTCAATGCCAATGACTCAG                         GCGTTAAATACAGATAAATATAACGCTTATATGTTGCAACAGCACCAGTTT
genomic: ATTTCAATACTTACACAGCTCATCAGCATCAGTCAATGCCAATGACTCAGgttagggttt ... taatgtgcagGCGTTAAATACAGATAAATATAACGCTTATATGTTGCAACAGCACCAGTTT
EST: gi|162190734|gb|FC366996.1|FC366996
EST:     ATTTCAATACTTACACAGCTCATCAGCATCAGTCAATGCCAATGACTCAG                         GCGTTAAATACAGATAAATATAACGCTTATATGTTGCAACAGCACCAGTTT
genomic: ATTTCAATACTTACACAGCTCATCAGCATCAGTCAATGCCAATGACTCAGgttagggttt ... taatgtgcagGCGTTAAATACAGATAAATATAACGCTTATATGTTGCAACAGCACCAGTTT
EST: gi|162191380|gb|FC368163.1|FC368163
EST:     ATTTCAATACTTACACAGCTCATCAGCATCAGTCAATGCCAATGACTCAG                         GCGTTAAATACAGATAAATATAACGCTTATATGTTGCAACAGCACCAGTTT
genomic: ATTTCAATACTTACACAGCTCATCAGCATCAGTCAATGCCAATGACTCAGgttagggttt ... taatgtgcagGCGTTAAATACAGATAAATATAACGCTTATATGTTGCAACAGCACCAGTTT
EST: gi|162190735|gb|FC366997.1|FC366997
EST:     ATTTCAATACTTACACAGCTCATCAGCATCAGTCAATGCCAATGACTCAG                         GCGTTAAATACAGATAAATATAACGCTTATATGTTGCAACAGCACCAGTTT
genomic: ATTTCAATACTTACACAGCTCATCAGCATCAGTCAATGCCAATGACTCAGgttagggttt ... taatgtgcagGCGTTAAATACAGATAAATATAACGCTTATATGTTGCAACAGCACCAGTTT
EST: gi|162198483|gb|FC375318.1|FC375318
EST:     ATTTCAATACTTACACAGCTCATCAGCATCAGTCAATGCCAATGACTCAG                         GCGTTAAATACAGATAAATATAACGCTTATATGTTGCAACAGCACCAGTTT
genomic: ATTTCAATACTTACACAGCTCATCAGCATCAGTCAATGCCAATGACTCAGgttagggttt ... taatgtgcagGCGTTAAATACAGATAAATATAACGCTTATATGTTGCAACAGCACCAGTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttctgttgggcgtctgtggcgctaagtcttatccgctgtttgcttaatgtgcagGCGTTAAATACAGATAAATATAACGCTTATATGTTGCAACAGCACCAGTTTATACTTCAACAGCAACAGCAGCACCTTCACCAACAACCGCAGCAACATC
                                          gcttaat  putative branch site (score: 4)
                                       tttgctt  CT-rich tract
                                            ttaatgt  TA-rich tract