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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcagtaatcttaccttgattttccccttatcacaacctgaaccgttggttgaattcttccttccaaaatctaatccctcgacggtaaaggtccactgaatccaccagctgtttgtgatgtttgaaatcaatagGCTGGCCCCCGGATCTGCCTAGGGAAAGACTCAGCATATCTTCAAATGAAGATGGTTACTGCACTGTTGTGTCGATTCTTCAAATTTGATTTGATGCCAG

Basic information

species Physcomitrella patens
transcript PP1S68_170V6.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S68_170V6.1 (Physcomitrella patens), 3'ss of exon 6
lower sequence: Vv01s0026g02700.t01 (Vitis vinifera), 3'ss of exon 5
gttcagtaatcttaccttgattttccccttatcacaacctgaaccgttggttgaattcttccttccaaaatctaatccctcgacggtaaaggtccactgaatccaccagctgtttgtgatgtttgaaatcaatagGCTGGCCCCCGGATCTGCCTAGGGAAAGACTCAGCATATCTTCAAATGAAGATGGTTACTGCACTGTTGTGTCGATTCTTCAAATTTGATTTGATGCCAG
     |||  |||     | ||      |   ||     | |  | |   ||     |         |     ||    |  |  | | |||  |||  |           |||  || | | ||  ||    ||||||| ||  |||| ||||| ||||| ||||| |||||||| |||||||||||||  |  ||  | |||||| | || ||||||||  ||||  | | ||
-----gtatgcttggaa-ggttgagaattccccaggttttaagacttcattttgcagcaaatggtggaggctaaaattatgaaatggatagg--caccaaggttgttgatggttcttgtt-tctgtgattg-cagGCTGGTCCAAGGATATGCCTTGGGAAGGACTCGGCATATCTCCAAATGAAGATGGCAATAGCTTTATTGTGTAGGTTTTTCAAATTCAATTTAGTACAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgacggtaaaggtccactgaatccaccagctgtttgtgatgtttgaaatcaatagGCTGGCCCCCGGATCTGCCTAGGGAAAGACTCAGCATATCTTCAAATGAAGATGGTTACTGCACTGTTGTGTCGATTCTTCAAATTTGATTTGATGCCAG
                                             aaatcaata  TA-rich tract