1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatttgattcgtctcattcgatgactgattttgcttgcgtctaacctcacctattggagattcaacactggccgttaaatctatatgctgtgtttcttctgcagTGTGAGCCTCCTCGTGACGCAGAAACCTACATTCACCGGTCTGGGCGTACGGGAAGAGCTGGAAATACTGGTGTTTCTGTGTTGTTTTTTGACCGGAAGA
species | Physcomitrella patens |
transcript | PP1S67_231V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATGTTGCTGCCAGAGGGTTGGACATAAACGATGTGCAACTGGTGATTCAG TGTGAGCCTCCTCGTGACGCAGAAACCTACATTCACCGGTCTGGGCGTACGEST: gi|162195493|gb|FC369350.1|FC369350
genomic: ATGTTGCTGCCAGAGGGTTGGACATAAACGATGTGCAACTGGTGATTCAGgtatttgatt ... tcttctgcagTGTGAGCCTCCTCGTGACGCAGAAACCTACATTCACCGGTCTGGGCGTACG
EST: ATGTTGCTGCCAGAGGGTTGGACATAAACGATGTGCAACTGGTGATTCAG TGTGAGCCTCCTCGTGACGCAGAAACCTACATTCACCGGTCTGGGCGTACGEST: gi|162203869|gb|FC379966.1|FC379966
genomic: ATGTTGCTGCCAGAGGGTTGGACATAAACGATGTGCAACTGGTGATTCAGgtatttgatt ... tcttctgcagTGTGAGCCTCCTCGTGACGCAGAAACCTACATTCACCGGTCTGGGCGTACG
EST: ATGTTGCTGCCAGAGGGTTGGACATAAACGATGTGCAACTGGTGATTCAG TGTGAGCCTCCTCGTGACGCAAAAACCTACATTCACCGGTCTGGGCGTACGEST: gi|100415313|gb|BY975254.1|BY975254
genomic: ATGTTGCTGCCAGAGGGTTGGACATAAACGATGTGCAACTGGTGATTCAGgtatttgatt ... tcttctgcagTGTGAGCCTCCTCGTGACGCAGAAACCTACATTCACCGGTCTGGGCGTACG
EST: ATGTTGCTGCCAGAGGGTTGGACATAAACGATGTGCAACTGGTGATTCAG TGTGGAGCCTCCTCGTGACGCAGAAACCTACATTCACCGGTCTGGGCGTEST: gi|162188412|gb|FC364282.1|FC364282
genomic: ATGTTGCTGCCAGAGGGTTGGACATAAACGATGTGCAACTGGTGATTCAGgtatttgatt ... tcttctgcagTGTG-AGCCTCCTCGTGACGCAGAAACCTACATTCACCGGTCTGGGCGT
EST: CGATGTGCAACTGGTGATTCAG TGTGAGCCTCCTCGTGACGCAGAAACCTACATTCACCGGTCTGGGCGTACGEST: gi|162165696|gb|FC342263.1|FC342263
genomic: CGATGTGCAACTGGTGATTCAGgtatttgatt ... tcttctgcagTGTGAGCCTCCTCGTGACGCAGAAACCTACATTCACCGGTCTGGGCGTACG
EST: ATGTTGCTGCCAGAGGGTTGGACATAAACGATGTGCAACTGGTGATTCAG TGTGAGCCTCCTCGTGACGCAGAAACCTACATTCACCGGTCTGGGCGTACG
genomic: ATGTTGCTGCCAGAGGGTTGGACATAAACGATGTGCAACTGGTGATTCAGgtatttgatt ... tcttctgcagTGTGAGCCTCCTCGTGACGCAGAAACCTACATTCACCGGTCTGGGCGTACG
cctattggagattcaacactggccgttaaatctatatgctgtgtttcttctgcagTGTGAGCCTCCTCGTGACGCAGAAACCTACATTCACCGGTCTGGGCGTACGGGAAGAGCTGGAAATACTGGTGTTTCTGTGTTGTTTTTTGACCGGAAGA
tgtttcttct CT-rich tract
ttaaatctatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttgattcgtctcattcgatgactgattttgcttgcgtctaacctcacctattggagattcaacactggccgttaaatctatatgctgtgtttcttctgcagTGTGAGCCTCCTCGTGACGCAGAAACCTACATTCACCGGTCTGGGCGTACGGGAAGAGCTGGAAATACTGGTGTTTCTGTGTTGTTTTTTGACCGGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA