Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatttttgatttcactgagtcccttgtgttgttgggaggcgattcgtagctgccttgtggtttggagcttggatgatgatttctgacgttgttttttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGGCGTTGTGCTGCTGCGAGCTCGGCATTGTCTACTATTCGTCTCGCGTAGG

Basic information

species Physcomitrella patens
transcript PP1S67_176V6.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162265043|gb|FC440922.1|FC440922
EST:     GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG                         TAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
genomic: GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
EST: gi|37836964|gb|BJ594972.1|BJ594972
EST:     GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG                         TAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
genomic: GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
EST: gi|67698866|gb|BJ959099.1|BJ959099
EST:     GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG                         TAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
genomic: GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
EST: gi|162242420|gb|FC416150.1|FC416150
EST:     GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG                         TAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
genomic: GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
EST: gi|18338245|gb|BJ170269.1|BJ170269
EST:     GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG                         TAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
genomic: GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
EST: gi|37824917|gb|BJ582983.1|BJ582983
EST:     GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG                         TAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
genomic: GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
EST: gi|37848049|gb|BJ606057.1|BJ606057
EST:     GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG                         TAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
genomic: GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
EST: gi|37824545|gb|BJ582611.1|BJ582611
EST:     GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG                         TAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
genomic: GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
EST: gi|18337976|gb|BJ170000.1|BJ170000
EST:     GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG                         TAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
genomic: GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
EST: gi|22132435|gb|BQ827160.1|BQ827160
EST:     GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG                         TAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
genomic: GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
EST: gi|162277839|gb|FC454302.1|FC454302
EST:     GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGANAG                         TAATGCTGAAGGATATATGT
genomic: GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGT
EST: gi|208396682|gb|DC929033.1|DC929033
EST:     GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG                         TAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
genomic: GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
EST: gi|37832037|gb|BJ590049.1|BJ590049
EST:     GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG                         TAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
genomic: GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
EST: gi|18338543|gb|BJ170567.1|BJ170567
EST:     GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG                         TAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
genomic: GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
EST: gi|67699804|gb|BJ960037.1|BJ960037
EST:     GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG                         TAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
genomic: GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
EST: gi|208367542|gb|DC943945.1|DC943945
EST:     GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG                         TAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
genomic: GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
EST: gi|162210234|gb|FC386420.1|FC386420
EST:     GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG                         TAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
genomic: GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
EST: gi|162174284|gb|FC350667.1|FC350667
EST:     GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG                         TAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCACGATGAGG
genomic: GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
EST: gi|37827194|gb|BJ585206.1|BJ585206
EST:     GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG                         TAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
genomic: GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
EST: gi|208357329|gb|DC949931.1|DC949931
EST:     GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG                         TAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
genomic: GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
EST: gi|162167056|gb|FC342518.1|FC342518
EST:     GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGANAG                         TAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
genomic: GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
EST: gi|162260947|gb|FC438004.1|FC438004
EST:     GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG                         TAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
genomic: GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
EST: gi|162174283|gb|FC350666.1|FC350666
EST:     GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG                         TAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
genomic: GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
EST: gi|67698970|gb|BJ959203.1|BJ959203
EST:     GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG                         TAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
genomic: GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
EST: gi|37830904|gb|BJ588916.1|BJ588916
EST:     GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG                         TAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
genomic: GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
EST: gi|162265042|gb|FC440921.1|FC440921
EST:     GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG                         TAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
genomic: GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
EST: gi|37825061|gb|BJ583127.1|BJ583127
EST:     GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG                         TAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
genomic: GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
EST: gi|37832988|gb|BJ591000.1|BJ591000
EST:     GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG                         TAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
genomic: GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
EST: gi|67691537|gb|BJ951770.1|BJ951770
EST:     GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG                         TAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
genomic: GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
EST: gi|208360989|gb|DC957496.1|DC957496
EST:     GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG                         TAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
genomic: GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
EST: gi|208397882|gb|DC916189.1|DC916189
EST:     GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG                         TAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
genomic: GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
EST: gi|18336658|gb|BJ168681.1|BJ168681
EST:     GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG                         T--TGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
genomic: GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
EST: gi|208365472|gb|DC954713.1|DC954713
EST:     GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG                         TAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
genomic: GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
EST: gi|162162877|gb|FC338113.1|FC338113
EST:     GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG                         TAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
genomic: GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
EST: gi|208364787|gb|DC943647.1|DC943647
EST:     GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG                         TAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
genomic: GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
EST: gi|208382964|gb|DC927714.1|DC927714
EST:     GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG                         TAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
genomic: GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
EST: gi|162242247|gb|FC418447.1|FC418447
EST:     GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG                         TAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
genomic: GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
EST: gi|208346498|gb|DC917451.1|DC917451
EST:     GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG                         TAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
genomic: GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
EST: gi|208349647|gb|DC917825.1|DC917825
EST:     GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG                         TAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
genomic: GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
EST: gi|162229444|gb|FC405830.1|FC405830
EST:     GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG                         TAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
genomic: GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
EST: gi|208387528|gb|DC953270.1|DC953270
EST:     GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG                         TAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
genomic: GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
EST: gi|208356273|gb|DC957349.1|DC957349
EST:     GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG                         TAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
genomic: GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
EST: gi|162230670|gb|FC406093.1|FC406093
EST:     GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG                         TAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
genomic: GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
EST: gi|208387631|gb|DC953373.1|DC953373
EST:     GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG                         TAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
genomic: GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
EST: gi|208366430|gb|DC943906.1|DC943906
EST:     GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG                         TAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
genomic: GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
EST: gi|18333689|gb|BJ165704.1|BJ165704
EST:     GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG                         TAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
genomic: GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
EST: gi|208371040|gb|DC955916.1|DC955916
EST:     GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG                         TAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
genomic: GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
EST: gi|208365818|gb|DC951053.1|DC951053
EST:     GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG                         TAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
genomic: GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
EST: gi|208392097|gb|DC946165.1|DC946165
EST:     GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG                         TAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
genomic: GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
EST: gi|162259101|gb|FC436408.1|FC436408
EST:     GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG                         TAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
genomic: GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
EST: gi|18340333|gb|BJ172361.1|BJ172361
EST:     GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG                         TAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
genomic: GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
EST: gi|208351274|gb|DC921553.1|DC921553
EST:     GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG                         TAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
genomic: GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
EST: gi|208397909|gb|DC916664.1|DC916664
EST:     GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG                         TAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
genomic: GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
EST: gi|37853249|gb|BJ611257.1|BJ611257
EST:     GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG                         TAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
genomic: GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
EST: gi|162242421|gb|FC416151.1|FC416151
EST:     GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGANAG                         TAATGCTGAAAGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
genomic: GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
EST: gi|162277838|gb|FC454301.1|FC454301
EST:     GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG                         TAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
genomic: GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
EST: gi|208393871|gb|DC946109.1|DC946109
EST:     GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG                         TAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
genomic: GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
EST: gi|208366539|gb|DC954847.1|DC954847
EST:     GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG                         TAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
genomic: GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
EST: gi|18338407|gb|BJ170431.1|BJ170431
EST:     GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG                         TAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
genomic: GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
EST: gi|37839299|gb|BJ597307.1|BJ597307
EST:     GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG                         TAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
genomic: GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
EST: gi|208363087|gb|DC946942.1|DC946942
EST:     GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG                         TAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
genomic: GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
EST: gi|162173997|gb|FC350512.1|FC350512
EST:     GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG                         TAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCANGATGAGG
genomic: GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
EST: gi|208366918|gb|DC951405.1|DC951405
EST:     GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG                         TAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
genomic: GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
EST: gi|162173996|gb|FC350511.1|FC350511
EST:     GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG                         TAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
genomic: GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
EST: gi|162167055|gb|FC342517.1|FC342517
EST:     GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG                         TAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
genomic: GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
EST: gi|208382673|gb|DC919827.1|DC919827
EST:     GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG                         TAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
genomic: GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
EST: gi|37828810|gb|BJ586822.1|BJ586822
EST:     GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG                         TAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
genomic: GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
EST: gi|208375111|gb|DC944850.1|DC944850
EST:     GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG                         TAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
genomic: GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
EST: gi|162260946|gb|FC438003.1|FC438003
EST:     GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG                         TAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
genomic: GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
EST: gi|208349293|gb|DC918029.1|DC918029
EST:     GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG                         TAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
genomic: GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
EST: gi|208364977|gb|DC947119.1|DC947119
EST:     GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG                         TAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
genomic: GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
EST: gi|208382373|gb|DC927907.1|DC927907
EST:     GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG                         TAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
genomic: GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
EST: gi|208371871|gb|DC951703.1|DC951703
EST:     GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG                         TAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
genomic: GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
EST: gi|208375272|gb|DC945014.1|DC945014
EST:     GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG                         TAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG
genomic: GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 73

GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGgtatattttt ... tttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGGCGTTGTGCTGCTGCGAGCTCGGCATTGTCTACTATTCGTCTCGCGTAGG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgccttgtggtttggagcttggatgatgatttctgacgttgttttttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGGCGTTGTGCTGCTGCGAGCTCGGCATTGTCTACTATTCGTCTCGCGTAGG
                                       ttgtttttt  CT-rich tract
                                       ttgtttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatatttttgatttcactgagtcccttgtgttgttgggaggcgattcgtagctgccttgtggtttggagcttggatgatgatttctgacgttgttttttgatgcagTAATGCTGAAGGATATATGTGGAGAAATCCCATTAAGAGCTCAGGATGAGGCGTTGTGCTGCTGCGAGCTCGGCATTGTCTACTATTCGTCTCGCGTAGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC