1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tgtttgggtgtggtggtggtaatttgtatttttcgtttgcttgctaagttattcatttctctaagtaaatttatttgggtacgaattattatttttgcagGAAAAAAGTTCTGGTGGGAAGCATGTCAAGAAAGAAAGAAAGTTAACCAACATAG
species | Physcomitrella patens |
transcript | PP1S66_226V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GGCATTCGCAGCGCATGGGCAATGGGGATTCGAAAGAGCCTACCTCATAA GAAAAAAGTTCTGGTGGGAAGCATGTCAAGAAAGAAAGAAAGTTAACCAAAEST: gi|162231559|gb|FC408204.1|FC408204
genomic: GGCATTCGCAGCGCATGGGCAATGGGGATTCGAAAGAGCCTACCTCAAAAgtaagcttta ... atttttgcagGAAAAAAGTTCTGGTGGGAAGCATGTCAAGAAAGAAAGAAAGTTAACCAA-
EST: GGCATTCGCAGCGCATGGGCAATGGGGATTCGAAAGAGCCTACCTCANAA GAAAAAAGTTCTGGTGGGAAGCATGTCAAGAAAGAAAGAAAGTTAACCAACEST: gi|162153325|gb|FC329835.1|FC329835
genomic: GGCATTCGCAGCGCATGGGCAATGGGGATTCGAAAGAGCCTACCTCAAAAgtaagcttta ... atttttgcagGAAAAAAGTTCTGGTGGGAAGCATGTCAAGAAAGAAAGAAAGTTAACCAAC
EST: GGCATTCGCAGCGCATGGGCTATGGGGATTCGAAAGAGCCTACCTCAAAA GAAAAAAGTTCTGGTGGGAAGCATGTCAAGAAAGAAAGAAAGTTAACCAAC
genomic: GGCATTCGCAGCGCATGGGCAATGGGGATTCGAAAGAGCCTACCTCAAAAgtaagcttta ... atttttgcagGAAAAAAGTTCTGGTGGGAAGCATGTCAAGAAAGAAAGAAAGTTAACCAAC
aagttattcatttctctaagtaaatttatttgggtacgaattattatttttgcagGAAAAAAGTTCTGGTGGGAAGCATGTCAAGAAAGAAAGAAAGTTAACCAACATAG
ttattttt CT-rich tract
atttctctaagtaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtttgggtgtggtggtggtaatttgtatttttcgtttgcttgctaagttattcatttctctaagtaaatttatttgggtacgaattattatttttgcagGAAAAAAGTTCTGGTGGGAAGCATGTCAAGAAAGAAAGAAAGTTAACCAACATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA