1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtactgatgatacttctaggtgcttattctctgtgtatcacattctgtcatgtttggaacagtttgggggttacggattttctgtcttactattttgtatgggacgtagatgataacctctgaaagtggtatggattggaacagGATTTTCTCACCATTTCTACAGGCAAGAGAAAACACGATGAAATTTCCTCTGGACAGTATTATATCCCTCAACGAGATGGTGCTGTAGATGATGAGCTGT
species | Physcomitrella patens |
transcript | PP1S62_239V6.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATACAGCACAAGCACCTGTTGCAGCGCCAGGCGCACCTCCTATTACCAAG GATTTTCTCACCATTTCTACAGGCAAGEST: gi|161970310|gb|EE296263.1|EE296263
genomic: ATACAGCACAAGCACCTGTTGCAGCGCCAGGCGCACCTCCTATTACCAAGgtactgatga ... attggaacagGATTTTCTCACCATTTCTACAGGCAAG
EST: ATACAGCACAAGCACCTGTTGCAGCGCCAGGCGCACCTCCTATTACCAAG GATTTTCTCACCATTTCTACAGGCAAGAGAAAACACGATGAAATTTCCTCTEST: gi|162211735|gb|FC387399.1|FC387399
genomic: ATACAGCACAAGCACCTGTTGCAGCGCCAGGCGCACCTCCTATTACCAAGgtactgatga ... attggaacagGATTTTCTCACCATTTCTACAGGCAAGAGAAAACACGATGAAATTTCCTCT
EST: ATACAGCACAAGCACCTGTTGCAGCGCCAGGCGCACCTCCTATTACCAAG GATTTTCTCACCATTTCTACAGGCAAGAGAAAACACGATGAAATTTCCTCTEST: gi|162169515|gb|FC346079.1|FC346079
genomic: ATACAGCACAAGCACCTGTTGCAGCGCCAGGCGCACCTCCTATTACCAAGgtactgatga ... attggaacagGATTTTCTCACCATTTCTACAGGCAAGAGAAAACACGATGAAATTTCCTCT
EST: ATACAGCACAAGCACCTGTTGCAGCGCCAGGCGCACCTCCTATTACCAAG GATTTTCTCACCATTTCTACAGGCAAGAGAAAACACGATGAAATTTCCTCT
genomic: ATACAGCACAAGCACCTGTTGCAGCGCCAGGCGCACCTCCTATTACCAAGgtactgatga ... attggaacagGATTTTCTCACCATTTCTACAGGCAAGAGAAAACACGATGAAATTTCCTCT
ctattttgtatgggacgtagatgataacctctgaaagtggtatggattggaacagGATTTTCTCACCATTTCTACAGGCAAGAGAAAACACGATGAAATTTCCTCTGGACAGTATTATATCCCTCAACGAGATGGTGCTGTAGATGATGAGCTGT
tgataac putative branch site (score: 2)
atgataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactgatgatacttctaggtgcttattctctgtgtatcacattctgtcatgtttggaacagtttgggggttacggattttctgtcttactattttgtatgggacgtagatgataacctctgaaagtggtatggattggaacagGATTTTCTCACCATTTCTACAGGCAAGAGAAAACACGATGAAATTTCCTCTGGACAGTATTATATCCCTCAACGAGATGGTGCTGTAGATGATGAGCTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG