1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ccaatacatccttcaatttcttgaacgagactagagatgttgctgttcccacttcgctcgtataatttttagtagcttatatagcatattgcatgagcagGGTGAAGATGCTTCAATCGAGGCAGCGGTTAACGCAATTGGAGAATGCTTGAGGGAACCTGCTGGACCCAGAGCCTGCTCAGAAATCAAGTAGTGGAGAC
species | Physcomitrella patens |
transcript | PP1S5_248V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GGACACGATTAGCAGGGAAATATGGCAACAAATTTTACTGGCAGGAGATG GGTGAAGATGCTTCAATCGAGGCAGCGGTTAACGCAATTGGAGAATGCTTGEST: gi|162229579|gb|FC404860.1|FC404860
genomic: GGACACGATTAGCAGGGAAATATGGCAACAAATTTTACTGGCAGGAGATGgtaagctctt ... gcatgagcagGGTGAAGATGCTTCAATCGAGGCAGCGGTTAACGCAATTGGAGAATGCTTG
EST: GGACACGATTAGCAGGGAAATATGGCAACAAATTTTACTGGCAGGAGATG GGTGAAGATGCTTCAATCGAGGCAGCGGTTAACGCAATTGGAGAATGCTTGEST: gi|67696673|gb|BJ956906.1|BJ956906
genomic: GGACACGATTAGCAGGGAAATATGGCAACAAATTTTACTGGCAGGAGATGgtaagctctt ... gcatgagcagGGTGAAGATGCTTCAATCGAGGCAGCGGTTAACGCAATTGGAGAATGCTTG
EST: GGACACGATTAGCAGGGAAATATGGCAACAAATTTTACTGGCAGGAGATG GGTGAAGATGCTTCAATCGAGGCAGCGGTTAACGCAATTGGAGAATGCTTGEST: gi|22492592|gb|BU052515.1|BU052515
genomic: GGACACGATTAGCAGGGAAATATGGCAACAAATTTTACTGGCAGGAGATGgtaagctctt ... gcatgagcagGGTGAAGATGCTTCAATCGAGGCAGCGGTTAACGCAATTGGAGAATGCTTG
EST: GGACACGATTAGCAGGGAAATATGGCAACAAATTTTACTGGCAGGAGATG GGTGAAGATGCTTCAATCGAGGCAGCGGTTAACGCAATTGGAGAATGCTTGEST: gi|162224698|gb|FC401946.1|FC401946
genomic: GGACACGATTAGCAGGGAAATATGGCAACAAATTTTACTGGCAGGAGATGgtaagctctt ... gcatgagcagGGTGAAGATGCTTCAATCGAGGCAGCGGTTAACGCAATTGGAGAATGCTTG
EST: GGACACGATTAGCAGGGAAATATGGCAACAAATTTTACTGGCAGGAGATG GGTGAAGATGCTTTCA-TCGAGGCAGCGGTTAACGCAATTGGAGAATGCTTEST: gi|162204923|gb|FC380605.1|FC380605
genomic: GGACACGATTAGCAGGGAAATATGGCAACAAATTTTACTGGCAGGAGATGgtaagctctt ... gcatgagcagGGTGAAGATGCTT-CAATCGAGGCAGCGGTTAACGCAATTGGAGAATGCTT
EST: GGACACGATTAGCAGGGAAATATGGCAACAAATTTTACTGGCAGGAGATG GGTGAAGATGCTTCAATCGAGGCAGCGGTTAACGCAATTGGAGAATGCTTGEST: gi|162224697|gb|FC401945.1|FC401945
genomic: GGACACGATTAGCAGGGAAATATGGCAACAAATTTTACTGGCAGGAGATGgtaagctctt ... gcatgagcagGGTGAAGATGCTTCAATCGAGGCAGCGGTTAACGCAATTGGAGAATGCTTG
EST: GGACACGATTAGCAGGGAAATATGGCAACAAATTTTACTGGCAGGAGATG GGTGAAGATGCTTCAATCGAGGCAGCGGTTAACGCAATTGGAGAATGCTTGEST: gi|162224170|gb|FC399234.1|FC399234
genomic: GGACACGATTAGCAGGGAAATATGGCAACAAATTTTACTGGCAGGAGATGgtaagctctt ... gcatgagcagGGTGAAGATGCTTCAATCGAGGCAGCGGTTAACGCAATTGGAGAATGCTTG
EST: GGACACGATTAGCAGGGAAATATGGCAACAAATTTTACTGGCAGGAGATG GGTGAAGATGCTTCAATCGAGGCAGCGGTTAACGCAATTGGAGAATGCTTGEST: gi|67579413|gb|BJ951534.1|BJ951534
genomic: GGACACGATTAGCAGGGAAATATGGCAACAAATTTTACTGGCAGGAGATGgtaagctctt ... gcatgagcagGGTGAAGATGCTTCAATCGAGGCAGCGGTTAACGCAATTGGAGAATGCTTG
EST: GGACACGATTAGCAGGGAAATATGGCAACAAATTTTACTGGCAGGAGATG GGTGAAGATGCTTCAATCGAGGCAGCGGTTAACGCAATTGGAGAATGCTTGEST: gi|67701119|gb|BJ961352.1|BJ961352
genomic: GGACACGATTAGCAGGGAAATATGGCAACAAATTTTACTGGCAGGAGATGgtaagctctt ... gcatgagcagGGTGAAGATGCTTCAATCGAGGCAGCGGTTAACGCAATTGGAGAATGCTTG
EST: GGACACGATTAGCAGGGAAATATGGCAACAAATTTTACTGGCAGGAGATG GGTGAAGATGCTTCAATCGAGGCAGCGGTTAACGCAATTGGAGAATGCTTGEST: gi|67692877|gb|BJ953110.1|BJ953110
genomic: GGACACGATTAGCAGGGAAATATGGCAACAAATTTTACTGGCAGGAGATGgtaagctctt ... gcatgagcagGGTGAAGATGCTTCAATCGAGGCAGCGGTTAACGCAATTGGAGAATGCTTG
EST: GGACACGATTAGCAGGGAAATATGGCAACAAATTTTACTGGCAGGAGATG GGTGAAGATGCTTCAATCGAGGCAGCGGTTAACGCAATTGGAGAATGCTTG
genomic: GGACACGATTAGCAGGGAAATATGGCAACAAATTTTACTGGCAGGAGATGgtaagctctt ... gcatgagcagGGTGAAGATGCTTCAATCGAGGCAGCGGTTAACGCAATTGGAGAATGCTTG
ttcccacttcgctcgtataatttttagtagcttatatagcatattgcatgagcagGGTGAAGATGCTTCAATCGAGGCAGCGGTTAACGCAATTGGAGAATGCTTGAGGGAACCTGCTGGACCCAGAGCCTGCTCAGAAATCAAGTAGTGGAGAC
tataatttttagtagc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccaatacatccttcaatttcttgaacgagactagagatgttgctgttcccacttcgctcgtataatttttagtagcttatatagcatattgcatgagcagGGTGAAGATGCTTCAATCGAGGCAGCGGTTAACGCAATTGGAGAATGCTTGAGGGAACCTGCTGGACCCAGAGCCTGCTCAGAAATCAAGTAGTGGAGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA