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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactgtccttctgaatatgagcagtgggcttgggtttaaagttgctgttcagttgtatttctgtaatccgaaaaaacatcccgaatgaagaaagatttgtgagtcggatgtgttgaagcttcggattcatgtactaaatgtaacgatctggaattctgactacgcagGACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATACATCGGAGGTCATGCTGTTAAGCTGGTTGGTTGGGGAACCACAGATGATG

Basic information

species Physcomitrella patens
transcript PP1S58_52V6.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S58_52V6.1 (Physcomitrella patens), 3'ss of exon 6
lower sequence: GRMZM2G108849_T04 (Zea mays), 3'ss of exon 8
gtaactgtccttctgaatatgagcagtgggcttgggtttaaagttgctgttcagttgtatttctgtaatccgaaaaaacatcccgaatgaagaaagatttgtgagtcggatgtgttgaagcttcggattcatgtactaaatgtaacgatctggaattctgactacgcagGACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATACATCGGAGGTCATGCTGTTAAGCTGGTTGGTTGGGGAACCACAGATGATG
                                                                  |  |      | ||| |  | |     || || | | | |     |    ||| |||   |||  | |     ||   || ||    |||     ||    |||| ||||||||||||||| |||| |||||||||||| |    |||||    || || || ||||| || ||| || |||| ||||||||||  |||| ||
--------------------------------------------------------------taacatgctttgggatcattcatagtcttagaaaatatatcattttagcggaaagaaacttt--atttttttttctgattcgacaatgaaaaat-----ctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATTATGGGTGGCCATGCCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTG

upper sequence: PP1S58_52V6.1 (Physcomitrella patens), 3'ss of exon 6
lower sequence: GRMZM2G108849_T01 (Zea mays), 3'ss of exon 8
gtaactgtccttctgaatatgagcagtgggcttgggtttaaagttgctgttcagttgtatttctgtaatccgaaaaaacatcccgaatgaagaaagatttgtgagtcggatgtgttgaagcttcggattcatgtactaaatgtaacgatctggaattctgactacgcagGACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATACATCGGAGGTCATGCTGTTAAGCTGGTTGGTTGGGGAACCACAGATGATG
                                                       | |||      |  |      | ||| |  | |     || || | | | |     |    ||| |||   |||  | |     ||   || ||    |||     ||    |||| ||||||||||||||| |||| |||||||||||| |    |||||    || || || ||||| || ||| || |||| ||||||||||  |||| ||
----------------------------------------------------gtatatatagtaacatgctttgggatcattcatagtcttagaaaatatatcattttagcggaaagaaacttt--atttttttttctgattcgacaatgaaaaat-----ctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATTATGGGTGGCCATGCCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTG

upper sequence: PP1S58_52V6.1 (Physcomitrella patens), 3'ss of exon 6
lower sequence: Vv07s0005g02820.t01 (Vitis vinifera), 3'ss of exon 7
gtaactgtccttctgaatatgagcagtgggcttgggtttaaagttgctgttcagttgtatttctgtaatccgaaaaaacatcccgaatgaagaaagatttgtga-gtcggatgtgttgaagcttcggattcatgtactaaatgtaacg---atctggaattctgactacgcagGACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATACATCGGAGGTCATGCTGTTAAGCTGGTTGGTTGGGGAACCACAGATGATG
                                                                        |||  ||||   |  | |  | |   | || |      | ||   |  |||    |||  |||    ||  ||||    |  ||      |   | | ||||| || || || ||  |  | || || ||||   ||      || |    ||| ||||||||||| ||||||||| | |||||||||||||| |||||||
-----------------------------------------------------------------------caaattacatgt-ggttaagtatattctcgtaacaatttacgtaaagttgctcattattt-tgtttataacataacctatacttgatgggttttgttcacagGATTTTGCTCATTATGAGTCAGGAGTTTACAGATACACCACAGGCGATGTCATGGGAGGTCATGCCGTTAAGCTGATAGGTTGGGGAACCACCGATGATG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208375210|gb|DC945360.1|DC945360
EST:     CTGAGCTCTTCACCAATGGCCCTATTGAAGTGGCTTTTGACGTTTTTGAG                         GACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATAC
genomic: CTGAGCTCTTCACCAATGGCCCTATTGAAGTGGCTTTTGACGTTTTTGAGgtaactgtcc ... gactacgcagGACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATAC
EST: gi|37834980|gb|BJ592992.1|BJ592992
EST:     CTGAGCTCTTCACCAATGGCCCTATTGAAGTGGCTTTTGACGTTTTTGAG                         GACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATAC
genomic: CTGAGCTCTTCACCAATGGCCCTATTGAAGTGGCTTTTGACGTTTTTGAGgtaactgtcc ... gactacgcagGACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATAC
EST: gi|162225539|gb|FC401473.1|FC401473
EST:     CTGAGCTCTTCACCAATGGCCCTATTGAAGTGGCTTTTGACGTTTTTGAG                         GACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATAC
genomic: CTGAGCTCTTCACCAATGGCCCTATTGAAGTGGCTTTTGACGTTTTTGAGgtaactgtcc ... gactacgcagGACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATAC
EST: gi|19789156|gb|BQ041132.1|BQ041132
EST:     TGACGTTTTTGAG                         GACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATAC
genomic: TGACGTTTTTGAGgtaactgtcc ... gactacgcagGACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATAC
EST: gi|162217353|gb|FC392821.1|FC392821
EST:     CTGAGCTCTTCACCAATGGCCCTATTGAAGTGGCTTTTGACGTTTTTGAG                         GACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATAC
genomic: CTGAGCTCTTCACCAATGGCCCTATTGAAGTGGCTTTTGACGTTTTTGAGgtaactgtcc ... gactacgcagGACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATAC
EST: gi|162225540|gb|FC401474.1|FC401474
EST:     CTGAGCTCTTCACCAATGGCCCTATTGAAGTGGCTTTTGACGTTTTTGAG                         GACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATAC
genomic: CTGAGCTCTTCACCAATGGCCCTATTGAAGTGGCTTTTGACGTTTTTGAGgtaactgtcc ... gactacgcagGACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATAC
EST: gi|208383533|gb|DC923685.1|DC923685
EST:     CTGAGCTCTTCACCAATGGCCCTATTGAAGTGGCTTTTGACGTTTTTGAG                         GACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATAC
genomic: CTGAGCTCTTCACCAATGGCCCTATTGAAGTGGCTTTTGACGTTTTTGAGgtaactgtcc ... gactacgcagGACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATAC
EST: gi|208382375|gb|DC927909.1|DC927909
EST:     CTGAGCTCTTCACCAATGGCCCTATTGAAGTGGCTTTTGACGTTTTTGAG                         GACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATAC
genomic: CTGAGCTCTTCACCAATGGCCCTATTGAAGTGGCTTTTGACGTTTTTGAGgtaactgtcc ... gactacgcagGACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATAC
EST: gi|162275589|gb|FC451318.1|FC451318
EST:     CTGAGCTCTTCACCAATGGCCCTATTGAAGTGGCTTTTGACGTTTTTGAG                         GACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATAC
genomic: CTGAGCTCTTCACCAATGGCCCTATTGAAGTGGCTTTTGACGTTTTTGAGgtaactgtcc ... gactacgcagGACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATAC
EST: gi|37850123|gb|BJ608131.1|BJ608131
EST:     CTGAGCTCTTCACCAATGGCCCTATTGAAGTGGCTTTTGACGTTTTTGAG                         GACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATAC
genomic: CTGAGCTCTTCACCAATGGCCCTATTGAAGTGGCTTTTGACGTTTTTGAGgtaactgtcc ... gactacgcagGACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATAC
EST: gi|37834354|gb|BJ592366.1|BJ592366
EST:     CTGAGCTCTTCACCAATGGCCCTATTGAAGTGGCTTTTGACGTTTTTGAG                         GACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATAC
genomic: CTGAGCTCTTCACCAATGGCCCTATTGAAGTGGCTTTTGACGTTTTTGAGgtaactgtcc ... gactacgcagGACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATAC
EST: gi|162272684|gb|FC448310.1|FC448310
EST:     CTGAGCTCTTCACCAATGGCCCTATTGAAGTGGCTTTTGACGTTTTTGAG                         GACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATAC
genomic: CTGAGCTCTTCACCAATGGCCCTATTGAAGTGGCTTTTGACGTTTTTGAGgtaactgtcc ... gactacgcagGACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATAC
EST: gi|162272146|gb|FC447940.1|FC447940
EST:     CTGAGCTCTTCACCAATGGCCCTATTGAAGTGGCTTTTGACGTTTTTGAG                         GACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATAC
genomic: CTGAGCTCTTCACCAATGGCCCTATTGAAGTGGCTTTTGACGTTTTTGAGgtaactgtcc ... gactacgcagGACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATAC
EST: gi|162272685|gb|FC448311.1|FC448311
EST:     CTGAGCTCTTCACCAATGGCCCTATTGAAGTGGCTTTTGACGTTTTTGAG                         GACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATAC
genomic: CTGAGCTCTTCACCAATGGCCCTATTGAAGTGGCTTTTGACGTTTTTGAGgtaactgtcc ... gactacgcagGACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATAC
EST: gi|37848539|gb|BJ606547.1|BJ606547
EST:     CTGAGCTCTTCACCAATGGCCCTATTGAAGTGGCTTTTGACGTTTTTGAG                         GACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATAC
genomic: CTGAGCTCTTCACCAATGGCCCTATTGAAGTGGCTTTTGACGTTTTTGAGgtaactgtcc ... gactacgcagGACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATAC
EST: gi|37833205|gb|BJ591217.1|BJ591217
EST:     CTGAGCTCTTCACCAATGGCCCTATTGAAGTGGCTTTTGACGTTTTTGAG                         GACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATAC
genomic: CTGAGCTCTTCACCAATGGCCCTATTGAAGTGGCTTTTGACGTTTTTGAGgtaactgtcc ... gactacgcagGACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATAC
EST: gi|162190517|gb|FC365739.1|FC365739
EST:     CTGAGCTCTTCACCAATGGCCCTATTGAAGTGGCTTTTGACGTTTTTGAG                         GACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATAC
genomic: CTGAGCTCTTCACCAATGGCCCTATTGAAGTGGCTTTTGACGTTTTTGAGgtaactgtcc ... gactacgcagGACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATAC
EST: gi|7046887|gb|AW476831.1|AW476831
EST:     CTGAGCTCTTCACCAATGGCCCTATTGAAGTGGCTTTTGACGTTTTTGAG                         GACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATAC
genomic: CTGAGCTCTTCACCAATGGCCCTATTGAAGTGGCTTTTGACGTTTTTGAGgtaactgtcc ... gactacgcagGACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATAC
EST: gi|162245122|gb|FC421596.1|FC421596
EST:     CTGAGCTCTTCACCAATGGCCCTATTGAAGTGGCTTTTGACGTTTTTGAG                         GACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATAC
genomic: CTGAGCTCTTCACCAATGGCCCTATTGAAGTGGCTTTTGACGTTTTTGAGgtaactgtcc ... gactacgcagGACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATAC
EST: gi|162276643|gb|FC452221.1|FC452221
EST:     CTGAGCTCTTCACCAATGGCCCTATTGAAGTGGCTTTTGACGTTTTTGAG                         GACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATAC
genomic: CTGAGCTCTTCACCAATGGCCCTATTGAAGTGGCTTTTGACGTTTTTGAGgtaactgtcc ... gactacgcagGACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATAC
EST: gi|67697615|gb|BJ957848.1|BJ957848
EST:     CTGAGCTCTTCACCAATGGCCCTATTGAAGTGGCTTTTGACGTTTTTGAG                         GACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATAC
genomic: CTGAGCTCTTCACCAATGGCCCTATTGAAGTGGCTTTTGACGTTTTTGAGgtaactgtcc ... gactacgcagGACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATAC
EST: gi|162223960|gb|FC398966.1|FC398966
EST:     CTGAGCTCTTCACCAATGGCCCTATTGAAGTGGCTTTTGACGTTTTTGAG                         GACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATAC
genomic: CTGAGCTCTTCACCAATGGCCCTATTGAAGTGGCTTTTGACGTTTTTGAGgtaactgtcc ... gactacgcagGACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATAC
EST: gi|37850547|gb|BJ608555.1|BJ608555
EST:     CTGAGCTCTTCACCAATGGCCCTATTGAAGTGGCTTTTGACGTTTTTGAG                         GACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATAC
genomic: CTGAGCTCTTCACCAATGGCCCTATTGAAGTGGCTTTTGACGTTTTTGAGgtaactgtcc ... gactacgcagGACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATAC
EST: gi|19777686|gb|BQ039216.1|BQ039216
EST:     CTGAGCTCTTCACCAATGGCCCTATTGAAGTGGCTTTTGACGTTTTTGAG                         GACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATAC
genomic: CTGAGCTCTTCACCAATGGCCCTATTGAAGTGGCTTTTGACGTTTTTGAGgtaactgtcc ... gactacgcagGACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATAC
EST: gi|162267714|gb|FC443704.1|FC443704
EST:     CTGAGCTCTTCACCAATGGCCCTATTGAAGTGGCTTTTGACGTTTTTGAG                         GACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATAC
genomic: CTGAGCTCTTCACCAATGGCCCTATTGAAGTGGCTTTTGACGTTTTTGAGgtaactgtcc ... gactacgcagGACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATAC
EST: gi|162211579|gb|FC387659.1|FC387659
EST:     CTGAGCTCTTCACCAATGGCCCTATTGAAGTGGCTTTTGACGTTTTTGAG                         GACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATAC
genomic: CTGAGCTCTTCACCAATGGCCCTATTGAAGTGGCTTTTGACGTTTTTGAGgtaactgtcc ... gactacgcagGACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATAC
EST: gi|162246566|gb|FC419998.1|FC419998
EST:     CTGAGCTCTTCACCAATGGCCCTATTGAAGTGGCTTTTGACGTTTTTGAG                         GACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATAC
genomic: CTGAGCTCTTCACCAATGGCCCTATTGAAGTGGCTTTTGACGTTTTTGAGgtaactgtcc ... gactacgcagGACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATAC
EST: gi|37826097|gb|BJ584109.1|BJ584109
EST:     CTGAGCTCTTCACCAATGGCCCTATTGAAGTGGCTTTTGACGTTTTTGAG                         GACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATAC
genomic: CTGAGCTCTTCACCAATGGCCCTATTGAAGTGGCTTTTGACGTTTTTGAGgtaactgtcc ... gactacgcagGACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATAC
EST: gi|162246567|gb|FC419999.1|FC419999
EST:     CTGAGCTCTTCACCAATGGCCCTATTGAAGTGGCTTTTGACGTTTTTGAG                         GACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATAC
genomic: CTGAGCTCTTCACCAATGGCCCTATTGAAGTGGCTTTTGACGTTTTTGAGgtaactgtcc ... gactacgcagGACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATAC
EST: gi|162190516|gb|FC365738.1|FC365738
EST:     CTGAGCTCTTCACCAATGGCCCTATTGAAGTGGCTTTTGACGTTTTTGAG                         GACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATAC
genomic: CTGAGCTCTTCACCAATGGCCCTATTGAAGTGGCTTTTGACGTTTTTGAGgtaactgtcc ... gactacgcagGACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATAC
EST: gi|37848901|gb|BJ606909.1|BJ606909
EST:     CACCAATGGCCCTATTGAAGTGGCTTTTGACGTTTTTGAG                         GACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATAC
genomic: CACCAATGGCCCTATTGAAGTGGCTTTTGACGTTTTTGAGgtaactgtcc ... gactacgcagGACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATAC
EST: gi|18337359|gb|BJ169383.1|BJ169383
EST:     CTGAGCTCTTCACCAATGGCCCTATTGAAGTGGCTTTTGACGTTTTTGAG                         GACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATAC
genomic: CTGAGCTCTTCACCAATGGCCCTATTGAAGTGGCTTTTGACGTTTTTGAGgtaactgtcc ... gactacgcagGACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATAC
EST: gi|37831346|gb|BJ589358.1|BJ589358
EST:     CTGAGCTCTTCACCAATGGCCCTATTGAAGTGGCTTTTGACGTTTTTGAG                         GACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATAC
genomic: CTGAGCTCTTCACCAATGGCCCTATTGAAGTGGCTTTTGACGTTTTTGAGgtaactgtcc ... gactacgcagGACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATAC
EST: gi|208375302|gb|DC945029.1|DC945029
EST:     CTGAGCTCTTCACCAATGGCCCTATTGAAGTGGCTTTTGACGTTTTTGAG                         GACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATAC
genomic: CTGAGCTCTTCACCAATGGCCCTATTGAAGTGGCTTTTGACGTTTTTGAGgtaactgtcc ... gactacgcagGACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATAC
EST: gi|162240945|gb|FC415224.1|FC415224
EST:     CTGAGCTCTTCACCAATGGCCCTATTGAAGTGGCTTTTGACGTTTTTGAG                         GACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATAC
genomic: CTGAGCTCTTCACCAATGGCCCTATTGAAGTGGCTTTTGACGTTTTTGAGgtaactgtcc ... gactacgcagGACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATAC
EST: gi|37837864|gb|BJ595872.1|BJ595872
EST:     CTGAGCTCTTCACCAATGGCCCTATTGAAGTGGCTTTTGACGTTTTTGAG                         GACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATAC
genomic: CTGAGCTCTTCACCAATGGCCCTATTGAAGTGGCTTTTGACGTTTTTGAGgtaactgtcc ... gactacgcagGACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgaagcttcggattcatgtactaaatgtaacgatctggaattctgactacgcagGACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATACATCGGAGGTCATGCTGTTAAGCTGGTTGGTTGGGGAACCACAGATGATG
                      taaatgtaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaactgtccttctgaatatgagcagtgggcttgggtttaaagttgctgttcagttgtatttctgtaatccgaaaaaacatcccgaatgaagaaagatttgtgagtcggatgtgttgaagcttcggattcatgtactaaatgtaacgatctggaattctgactacgcagGACTTCGCACACTACAAAACTGGGGTGTACAAGCACCTGTATGGTGGATACATCGGAGGTCATGCTGTTAAGCTGGTTGGTTGGGGAACCACAGATGATG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG