1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtattcttatctctactccagccctgcagtcaatgttttcaagccatttcggctttgatttcagactccaagttgtctgcattcacaccgattctcgaatcttcctcttaaccaaaatcaatgacggcgtctgcagTACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCGGAGATCTTCATGGGCGGACGTAACACAATCGTCATGCACAATACGTGCG
species | Physcomitrella patens |
transcript | PP1S55_204V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAG TACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCGEST: gi|40781590|gb|AJ583520.1|AJ583520
genomic: CGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAGgtattcttat ... gcgtctgcagTACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCG
EST: CGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAG TACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCGEST: gi|162197483|gb|FC372861.1|FC372861
genomic: CGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAGgtattcttat ... gcgtctgcagTACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCG
EST: CGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAG TACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCGEST: gi|162197697|gb|FC374947.1|FC374947
genomic: CGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAGgtattcttat ... gcgtctgcagTACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCG
EST: CGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAG TACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCGEST: gi|162170409|gb|FC347607.1|FC347607
genomic: CGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAGgtattcttat ... gcgtctgcagTACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCG
EST: CGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAG TACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCGEST: gi|67694287|gb|BJ954520.1|BJ954520
genomic: CGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAGgtattcttat ... gcgtctgcagTACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCG
EST: TATTGTGATCAAG TACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCGEST: gi|162194434|gb|FC368539.1|FC368539
genomic: TATTGTGATCAAGgtattcttat ... gcgtctgcagTACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCG
EST: CGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAG TACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCGEST: gi|162165316|gb|FC340817.1|FC340817
genomic: CGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAGgtattcttat ... gcgtctgcagTACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCG
EST: CGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAG TACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCGEST: gi|162172409|gb|FC349078.1|FC349078
genomic: CGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAGgtattcttat ... gcgtctgcagTACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCG
EST: ACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAG TACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCGEST: gi|37845840|gb|BJ603848.1|BJ603848
genomic: ACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAGgtattcttat ... gcgtctgcagTACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCG
EST: CGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAG TACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCGEST: gi|162184403|gb|FC359149.1|FC359149
genomic: CGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAGgtattcttat ... gcgtctgcagTACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCG
EST: CGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAG TACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTEST: gi|162182475|gb|FC357450.1|FC357450
genomic: CGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAGgtattcttat ... gcgtctgcagTACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTT
EST: CGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAG TACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCGEST: gi|162184271|gb|FC359693.1|FC359693
genomic: CGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAGgtattcttat ... gcgtctgcagTACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCG
EST: GATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATNCA-G TACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGEST: gi|162256552|gb|FC432862.1|FC432862
genomic: GATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGAT-CAAGgtattcttat ... gcgtctgcagTACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAG
EST: CGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAG TACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCGEST: gi|162220955|gb|FC396140.1|FC396140
genomic: CGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAGgtattcttat ... gcgtctgcagTACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCG
EST: CGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAG TACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCGEST: gi|162151547|gb|FC327260.1|FC327260
genomic: CGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAGgtattcttat ... gcgtctgcagTACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCG
EST: CGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAG TACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCGEST: gi|162213492|gb|FC389364.1|FC389364
genomic: CGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAGgtattcttat ... gcgtctgcagTACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCG
EST: CGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAG TACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCGEST: gi|37837950|gb|BJ595958.1|BJ595958
genomic: CGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAGgtattcttat ... gcgtctgcagTACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCG
EST: CCCGACCACGTTATNGTGATCAAG TACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCGEST: gi|19790272|gb|BQ041785.1|BQ041785
genomic: CCCGACCACGTTATTGTGATCAAGgtattcttat ... gcgtctgcagTACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCG
EST: CGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAG TACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCGEST: gi|162182387|gb|FC357986.1|FC357986
genomic: CGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAGgtattcttat ... gcgtctgcagTACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCG
EST: CGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAG TACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCGEST: gi|162198718|gb|FC373486.1|FC373486
genomic: CGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAGgtattcttat ... gcgtctgcagTACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCG
EST: CGATTATATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAG TACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCGEST: gi|162158409|gb|FC334204.1|FC334204
genomic: CGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAGgtattcttat ... gcgtctgcagTACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCG
EST: CTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAG TACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCGEST: gi|162246259|gb|FC421966.1|FC421966
genomic: CTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAGgtattcttat ... gcgtctgcagTACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCG
EST: CGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAG TACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCGEST: gi|162218352|gb|FC394526.1|FC394526
genomic: CGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAGgtattcttat ... gcgtctgcagTACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCG
EST: CGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAG TACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTA
genomic: CGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAGgtattcttat ... gcgtctgcagTACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTA
ttcacaccgattctcgaatcttcctcttaaccaaaatcaatgacggcgtctgcagTACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCGGAGATCTTCATGGGCGGACGTAACACAATCGTCATGCACAATACGTGCG
tcttaac putative branch site (score: 2)
aaaatcaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattcttatctctactccagccctgcagtcaatgttttcaagccatttcggctttgatttcagactccaagttgtctgcattcacaccgattctcgaatcttcctcttaaccaaaatcaatgacggcgtctgcagTACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCGGAGATCTTCATGGGCGGACGTAACACAATCGTCATGCACAATACGTGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC