Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattcttatctctactccagccctgcagtcaatgttttcaagccatttcggctttgatttcagactccaagttgtctgcattcacaccgattctcgaatcttcctcttaaccaaaatcaatgacggcgtctgcagTACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCGGAGATCTTCATGGGCGGACGTAACACAATCGTCATGCACAATACGTGCG

Basic information

species Physcomitrella patens
transcript PP1S55_204V6.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S55_204V6.1 (Physcomitrella patens), 3'ss of exon 6
lower sequence: LOC_Os03g09250.2 (Oryza sativa), 3'ss of exon 7
gtattcttatctctactccagccctgcagtcaatgttttcaagccatttcggctttgatttcagactccaagttgtctgcattcacaccgattctcgaatcttcctcttaaccaaaatcaatgacggcgtctgcagTACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCGGAGATCTTCATGGGCGGACGTAACACAATCGTCATGCACAATACGTGCG
                                  |||| |||     || | |  ||  |||     |  ||  || |||  | | |   |  ||    | |   |   |||     || |||    | ||||||||| || || ||||| || ||||||||||||||||||||||||||||| || |||||||||||||| ||    | ||| |||||  ||||||| || || |
----------------------------------gtttgcaa-----tttgtccatggattcttctgc--agcagtatgccattaaaaaaaaacttagttttggattaaaacttg--tccatgtattcttctgcagTATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCAGAGATCTTCATGGGGGGTAAGAGCACCATCGTTCTGCACAACACCTGTG

upper sequence: PP1S55_204V6.1 (Physcomitrella patens), 3'ss of exon 6
lower sequence: LOC_Os10g22450.1 (Oryza sativa), 3'ss of exon 7
gtattcttatctctactccagccctgcagtcaatgttttcaagccatttcggctttgatttcagactccaagttgtctgcattcacaccgattctcgaatcttcctcttaaccaaaatcaatgacggcgtctgcagTACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCGGAGATCTTCATGGGCGGACGTAACACAATCGTCATGCACAATACGTGCG
                                 |    |  |  |     | |    |  | | || ||  | ||  ||||      | |||  |    |     | |  |   |  | | ||        |||||||  | || || || || |||||||||||||| |||||||||||||| ||||||||||||||||| ||    ||||| |||||  ||||||| || ||||
--------------------------------ctccgatagaatctgccagaccgaaaaattatacccc--gctga-tgcacggtggctgatgatttggttgctgtttctattgag-taattgttaattgttgcagTATATTCCATACGTTGGGGACAGCAAGAGGGCCATGGACGAGTACACCTCGGAGATCTTCATGGGAGGGAAGAACACCATCGTGCTGCACAACACCTGCG

upper sequence: PP1S55_204V6.1 (Physcomitrella patens), 3'ss of exon 6
lower sequence: GRMZM2G071174_T01 (Zea mays), 3'ss of exon 2
gtattcttatctctactccagccctgcagtcaatgttttcaagccatttcggctttgatttcagactccaagttgtctgcattcacaccgattctcgaatcttcctcttaaccaaa---atcaatgacggcgtctgcagTACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCGGAGATCTTCATGGGCGGACGTAACACAATCGTCATGCACAATACGTGCG
                                                      | | |         | || |   ||  ||     |   |   |  |||| |||  |     |   ||||         | |||||||| |||| || |||||||||||||||||||| ||||||||||| || || |||||||||||||| ||    ||||| ||||   ||||||| || ||||
-----------------------------------------------------gtgggtcggtcgacactagctagttgtgtttgtgactgatgctgcttcttgctcaaaggttgatgaatcatccctatattttgcagTACATCCCCTACGTGGGTGACAGCAAGAGGGCTATGGACGAGTATACCTCTGAGATCTTCATGGGTGGCAAGAACACCATCGCGCTGCACAACACCTGCG

upper sequence: PP1S55_204V6.1 (Physcomitrella patens), 3'ss of exon 6
lower sequence: GRMZM2G177461_T01 (Zea mays), 3'ss of exon 7
gtattcttatctctactccagccctgcagtcaatgttttcaagccatttcggctttgatttcagactccaagttgtctgcattcacaccgattctcgaatcttc--ctcttaaccaaaatcaatgacg--gcgtctgcagTACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCGGAGATCTTCATGGGCGGACGTAACACAATCGTCATGCACAATACGTGCG
                            |||  |     |   ||| ||    |||  |||  ||||   |||      |||  |  |   |||  |  |  |    | |||  |||| |  ||  |    | | |||||||| |||| |||||||||||||||||||| || |||||||| || || || |||||||||||||||||    ||||| |||||  ||||||| || || |
----------------------------gtcggt-----cggtccacttgttgtttagtttgtgact--gagtctatcccatatatgctacttcatgtttgattaattgttactcaaagttgatccctcttcttttgcagTACATCCCCTATGTGGGTGACAGCAAGAGAGCCATGGACGAATATACCTCCGAGATCTTCATGGGCGGCAAGAACACCATCGTGCTGCACAACACCTGTG

upper sequence: PP1S55_204V6.1 (Physcomitrella patens), 3'ss of exon 6
lower sequence: GRMZM2G155242_T01 (Zea mays), 3'ss of exon 7
gtattcttatctctactccagccctgcagtcaatgttttcaagccatttcggctttgatttcagactccaagttgtctgcattcacaccgattctcgaatcttcctcttaaccaaaatcaatgacggcgtctgcagTACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCGGAGATCTTCATGGGCGGACGTAACACAATCGTCATGCACAATACGTGCG
                                  || |   |||   |    |||| |  ||    |  ||||||    |||   ||  |     |  || | | |   |||     ||| |  |      ||||||| || || || ||||| |||||||||||||| |||||||||||||| || |||||||||||||||||    ||||| |||||  ||||||| || || |
----------------------------------gtctgttagctgat----ctttcacctcg--ttaaaagttg---acatatgcaagg-----cagatttacattgaaacttg--tcact--cttttgttgcagTATGTGCCGTACGTGGGAGACAGCAAGAGGGCTATGGACGAGTACACCTCAGAGATCTTCATGGGCGGCAAGAACACCATCGTGCTGCACAACACCTGTG

upper sequence: PP1S55_204V6.1 (Physcomitrella patens), 3'ss of exon 6
lower sequence: GRMZM2G004528_T03 (Zea mays), 3'ss of exon 7
gtattcttatctctactccagccctgcagtcaatgttttcaagccatttcggctttgatttcagactccaagttgt-ctgcattcacaccgattctcgaatcttcctcttaaccaaaatcaatgacggcgtctgcagTACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCGGAGATCTTCATGGGCGGACGTAACACAATCGTCATGCACAATACGTGCG
                                  || |   |||   |    |     ||| | |  |      || | ||| |   | ||        || | | |   ||||     |      |  |  ||||||| || || |||||||| ||||| |||||||| |||||||||||||| || |||||||||||||||||    | ||| |||||  ||||||| || ||||
----------------------------------gtctgttagctgatcttccacctctttaaaaagctggcacgtgcagcagtttaaacg-----tagatttacattgaaacctgccactcctttgctgcatgcagTATGTGCCGTATGTGGGAGACAGTAAGAGGGCTATGGACGAGTACACATCAGAGATCTTCATGGGCGGCAAGAGCACCATCGTGCTGCACAACACCTGCG

upper sequence: PP1S55_204V6.1 (Physcomitrella patens), 3'ss of exon 6
lower sequence: GRMZM2G392513_T02 (Zea mays), 3'ss of exon 5
gtattcttatctctactccagccctgcagtcaatgttttcaagccatttcggctttgatttcagactccaagttgtctgcattcacaccgatt----ctcgaatcttcctcttaaccaaaatcaatgacggcgtctgcagTACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCGGAGATCTTCATGGGCGGACGTAACACAATCGTCATGCACAATACGTGCG
                                  || |   ||| | |    |||  |  ||    |  ||   |   |||    || |  ||    |    || | | |   |||      |      |  |  ||||||| || || || ||||| ||||| |||||||| |||||||||||||| || |||||||||||||| ||    ||||| |||||  ||||||| || || |
----------------------------------gtctattagctaat----cttccacctc----tttaaaaagctggcacatgcagcagtttaaacgtagatttacattaaaacttgccactcctttgctgcatgcagTATGTGCCGTACGTGGGAGACAGTAAGAGGGCTATGGACGAGTACACATCAGAGATCTTCATGGGTGGCAAGAACACCATCGTGCTGCACAACACCTGTG

upper sequence: PP1S55_204V6.1 (Physcomitrella patens), 3'ss of exon 6
lower sequence: GRMZM2G010768_T01 (Zea mays), 3'ss of exon 1
gtattcttatctctactccagccctgcagtcaatgttttcaagccatttcggctttgatttcagactccaagttgtctgcattcacaccgattctcgaatcttcctcttaaccaaaatcaatgacggcgtctgcagTACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCGGAGATCTTCATGGGCGGACGTAACACAATCGTCATGCACAATACGTGCG
                           ||   ||   ||| | |  |||       | || |||   |  ||| || |  |   | |   |   |  ||  | || || |               |  |  ||||||| || |  || ||||| ||||| |||||||| |||||||||||||| || ||||||||||||||| |    ||||| |||||  | ||||| || |  |
--------------------atttgttagctgat--cttccacctctttaaaaa--gcttgcaggtgc--agtagtttaaacgtagatttacattgaaacttgccactcattt------------gttgcatgcagTATGTGCTGTACGTGGGAGACAGTAAGAGGGCTATGGACGAGTACACATCAGAGATCTTCATGGGCAGCAAGAACACCATCGTGCTACACAACACCTATG

upper sequence: PP1S55_204V6.1 (Physcomitrella patens), 3'ss of exon 6
lower sequence: GRMZM2G145638_T02 (Zea mays), 3'ss of exon 3
gtattcttatctctactccagccctgcagtcaatgttttcaagccatttcggctttgatttcagactccaagttgtctgcattcacaccgattctcgaatcttcctcttaaccaaaatcaatgacggcgtctgcagTACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCGGAGATCTTCATGGGCGGACGTAACACAATCGTCATGCACAATACGTGCG
                    | |    ||   |   || ||   | ||        |||  || |  |  ||  || |  |   | |   |   |  ||  | || || |               |  |  ||||||| || || || ||||| || || |||||||| |||||||||||||| || |||||||| |||||| |    ||||| ||| |  ||||||| || ||||
--------------------gtctgttagctga-acttccacctctttaaaaa---gatggcacatgc--agcagtttaaacgtagatttacattgaaacttgccactcattt------------gttgcatgcagTATGTGCCGTACGTGGGAGATAGTAAGAGGGCTATGGACGAGTACACATCAGAGATCTTTATGGGCAGCAAGAACACCATCATGCTGCACAACACCTGCG

upper sequence: PP1S55_204V6.1 (Physcomitrella patens), 3'ss of exon 6
lower sequence: GLYMA05G31450.4 (Glycine max), 3'ss of exon 4
gtattcttatctctactccagccctgcagtcaatgttttcaagccatttcggctttgatttcagactccaagttgtc-tgcattcacaccgattctcgaatcttcctcttaaccaaaatcaatgacggcgtctgcagTACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCGGAGATCTTCATGGGCGGACGTAACACAATCGTCATGCACAATACGTGCG
                                          |  ||||    |||  |||   | |   |||       |  ||   |  ||||       |   | ||   ||   |   | |  |  | |||||||||| |||||||| || |||||||||||||| ||||| ||||||||||| ||||| |||||||| |||   |||||||| ||  ||||||| || || |
------------------------------------------gtaatttt--ttttatttttttatttttagtcactactccctctttcaaattcaattggttatttttttgacactttggtttattgtttttgcagTACGTGCCTTATGTAGGGGACAGCAAGAGGGCCATGGATGAGTACACTTCTGAGATATTCATGGGTGGAAAGAACACAATTGTGTTGCACAACACATGTG

upper sequence: PP1S55_204V6.1 (Physcomitrella patens), 3'ss of exon 6
lower sequence: GLYMA08G14670.3 (Glycine max), 3'ss of exon 6
gtattcttatctctactccagccctgcagtcaatgttttcaagccatttcggctttgatttcagactccaagttgtctgcattcacaccgattctcgaatcttcctcttaaccaaaatcaatgacggcgtctgcagTACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCGGAGATCTTCATGGGCGGACGTAACACAATCGTCATGCACAATACGTGCG
                                          |  ||||    ||| | |    ||||    |  |    ||||| |  | ||||  | |   |   |      || | | | |  |  | ||||||| || ||||| || || |||||||||||||| ||||| |||||| |||| ||||| ||||||||||||   |||||||| ||  ||||||| || || |
------------------------------------------gtaatttttatttttagtc---actcactctctttcaaattca-attggttctttatttgactcttcggt--aattaatttattggttttgcagTATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCTGAGATATTCATGGGCGGAAAGAACACAATTGTGTTGCACAACACTTGTG

upper sequence: PP1S55_204V6.1 (Physcomitrella patens), 3'ss of exon 6
lower sequence: GLYMA18G02210.4 (Glycine max), 3'ss of exon 7
gtattcttatctctactccagccctgcagtcaatgttttcaagccatttcggctttgatttcagactccaagttgtctgcattcacaccgattctcgaatcttcctcttaaccaaaatcaatgacggcgtctgcagTACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCGGAGATCTTCATGGGCGGACGTAACACAATCGTCATGCACAATACGTGCG
                                                      |  ||||    | || | || ||   |||     |  || ||   ||||    |  | |    |   || |    | ||||||| || ||||| || || || |||||||| || ||||| ||||||||||| ||||| |||||||| |||   ||||| || ||  ||||||| || || |
-----------------------------------------------------gtatatttgtttcacccatttttcactatttctttctcttgtcaggtctttgattctatctgctttgttgcc----tttgcagTATGTGCCTTACGTAGGGGATAGCAAGAGAGCCATGGATGAGTACACTTCAGAGATATTCATGGGTGGAAAGAACACCATTGTTTTGCACAACACATGTG

upper sequence: PP1S55_204V6.1 (Physcomitrella patens), 3'ss of exon 6
lower sequence: GLYMA18G02210.3 (Glycine max), 3'ss of exon 7
gtattcttatctctactccagccctgcagtcaatgttttcaagccatttcggctttgatttcagactccaagttgtctgcattcacaccgattctcgaatcttcctcttaaccaaaatcaatgacggcgtctgcagTACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCGGAGATCTTCATGGGCGGACGTAACACAATCGTCATGCACAATACGTGCG
         |    |  ||  || ||  ||   |||| | |||  || |  | ||            || | || ||   |||     |  || ||   ||||    |  | |    |   || |    | ||||||| || ||||| || || || |||||||| || ||||| ||||||||||| ||||| ||||||||                                   
--------gtgaacatcccgaccatgttgt---tgttattaaggtatatttgtttca----------cccatttttcactatttctttctcttgtcagGTCTTTGATTCTATCTGCTTTGTTGCC----TTTGCAGTATGTGCCTTACGTAGGGGATAGCAAGAGAGCCATGGATGAGTACACTTCAGAGATATTCATGGGT----------------------------------

upper sequence: PP1S55_204V6.1 (Physcomitrella patens), 3'ss of exon 6
lower sequence: Vv07s0031g00920.t01 (Vitis vinifera), 3'ss of exon 7
gtattcttatctctactccagccctgcagtcaatgttttcaagccatttcggctttgatttcagactccaagttgtctgcattcacaccgattctcgaatcttcctcttaaccaaaatcaatgacggcgtctgcagTACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCGGAGATCTTCATGGGCGGACGTAACACAATCGTCATGCACAATACGTGCG
                         ||||  |   |  |   |    |  |  ||  | ||||||  |    |||    ||||||  |  | |  | ||  ||      |  |    |   |||       ||||||| || || ||||| || || |||||||| || ||||| ||||||||||| ||||| |||||||| ||    | ||| || ||  ||||||| || ||||
------------------gtatatcgcaga-accctccttttgtttgtatgtattacaattcagatgctggtttggactcattcattctcactggctaacatt------atacggtgttgttgata----ttgcagTATGTGCCATATGTTGGAGATAGCAAGAGAGCCATGGATGAGTACACTTCTGAGATATTCATGGGTGGGAAGAGCACCATTGTGCTGCACAACACCTGCG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162151054|gb|FC326871.1|FC326871
EST:     CGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAG                         TACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCG
genomic: CGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAGgtattcttat ... gcgtctgcagTACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCG
EST: gi|40781590|gb|AJ583520.1|AJ583520
EST:     CGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAG                         TACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCG
genomic: CGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAGgtattcttat ... gcgtctgcagTACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCG
EST: gi|162197483|gb|FC372861.1|FC372861
EST:     CGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAG                         TACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCG
genomic: CGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAGgtattcttat ... gcgtctgcagTACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCG
EST: gi|162197697|gb|FC374947.1|FC374947
EST:     CGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAG                         TACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCG
genomic: CGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAGgtattcttat ... gcgtctgcagTACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCG
EST: gi|162170409|gb|FC347607.1|FC347607
EST:     CGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAG                         TACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCG
genomic: CGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAGgtattcttat ... gcgtctgcagTACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCG
EST: gi|67694287|gb|BJ954520.1|BJ954520
EST:     TATTGTGATCAAG                         TACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCG
genomic: TATTGTGATCAAGgtattcttat ... gcgtctgcagTACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCG
EST: gi|162194434|gb|FC368539.1|FC368539
EST:     CGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAG                         TACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCG
genomic: CGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAGgtattcttat ... gcgtctgcagTACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCG
EST: gi|162165316|gb|FC340817.1|FC340817
EST:     CGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAG                         TACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCG
genomic: CGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAGgtattcttat ... gcgtctgcagTACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCG
EST: gi|162172409|gb|FC349078.1|FC349078
EST:     ACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAG                         TACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCG
genomic: ACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAGgtattcttat ... gcgtctgcagTACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCG
EST: gi|37845840|gb|BJ603848.1|BJ603848
EST:     CGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAG                         TACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCG
genomic: CGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAGgtattcttat ... gcgtctgcagTACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCG
EST: gi|162184403|gb|FC359149.1|FC359149
EST:     CGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAG                         TACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTT
genomic: CGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAGgtattcttat ... gcgtctgcagTACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTT
EST: gi|162182475|gb|FC357450.1|FC357450
EST:     CGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAG                         TACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCG
genomic: CGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAGgtattcttat ... gcgtctgcagTACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCG
EST: gi|162184271|gb|FC359693.1|FC359693
EST:     GATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATNCA-G                         TACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAG
genomic: GATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGAT-CAAGgtattcttat ... gcgtctgcagTACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAG
EST: gi|162256552|gb|FC432862.1|FC432862
EST:     CGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAG                         TACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCG
genomic: CGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAGgtattcttat ... gcgtctgcagTACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCG
EST: gi|162220955|gb|FC396140.1|FC396140
EST:     CGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAG                         TACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCG
genomic: CGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAGgtattcttat ... gcgtctgcagTACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCG
EST: gi|162151547|gb|FC327260.1|FC327260
EST:     CGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAG                         TACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCG
genomic: CGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAGgtattcttat ... gcgtctgcagTACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCG
EST: gi|162213492|gb|FC389364.1|FC389364
EST:     CGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAG                         TACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCG
genomic: CGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAGgtattcttat ... gcgtctgcagTACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCG
EST: gi|37837950|gb|BJ595958.1|BJ595958
EST:     CCCGACCACGTTATNGTGATCAAG                         TACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCG
genomic: CCCGACCACGTTATTGTGATCAAGgtattcttat ... gcgtctgcagTACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCG
EST: gi|19790272|gb|BQ041785.1|BQ041785
EST:     CGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAG                         TACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCG
genomic: CGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAGgtattcttat ... gcgtctgcagTACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCG
EST: gi|162182387|gb|FC357986.1|FC357986
EST:     CGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAG                         TACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCG
genomic: CGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAGgtattcttat ... gcgtctgcagTACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCG
EST: gi|162198718|gb|FC373486.1|FC373486
EST:     CGATTATATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAG                         TACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCG
genomic: CGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAGgtattcttat ... gcgtctgcagTACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCG
EST: gi|162158409|gb|FC334204.1|FC334204
EST:     CTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAG                         TACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCG
genomic: CTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAGgtattcttat ... gcgtctgcagTACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCG
EST: gi|162246259|gb|FC421966.1|FC421966
EST:     CGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAG                         TACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCG
genomic: CGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAGgtattcttat ... gcgtctgcagTACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCG
EST: gi|162218352|gb|FC394526.1|FC394526
EST:     CGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAG                         TACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTA
genomic: CGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAGgtattcttat ... gcgtctgcagTACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcacaccgattctcgaatcttcctcttaaccaaaatcaatgacggcgtctgcagTACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCGGAGATCTTCATGGGCGGACGTAACACAATCGTCATGCACAATACGTGCG
                        tcttaac  putative branch site (score: 2)
                                aaaatcaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtattcttatctctactccagccctgcagtcaatgttttcaagccatttcggctttgatttcagactccaagttgtctgcattcacaccgattctcgaatcttcctcttaaccaaaatcaatgacggcgtctgcagTACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCGGAGATCTTCATGGGCGGACGTAACACAATCGTCATGCACAATACGTGCG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATC