1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gcgagtggcaattggaatgtggtaggacggtgtttctgtggtggtgagcgtttgttgtgtgcacggcatgttgatgggtttccgtgggtgttgtgtgaagGCTGAACGTAGAGGAAACGAGGAAGGTGCTTGGCGCAGACTCGCTGGCGTTTTTGCCGCTTGAGCGACTGAGGGGGATGCTGGAGGACGAAGCCCCGAAG
species | Physcomitrella patens |
transcript | PP1S55_196V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGCTACTATGGTGTGGACACTCCGAGCAAGGAGGAGCTGATTTCCTACAG GCTGAACGTAGAGGAAACGAGGAAGGTGCTTGGCGCAGACTCGCTGGCGTTEST: gi|162154487|gb|FC330489.1|FC330489
genomic: TGCTACTATGGTGTGGACACTCCGAGCAAGGAGGAGCTGATTTCCTACAGgtgccattca ... ttgtgtgaagGCTGAACGTAGAGGAAACGAGGAAGGTGCTTGGCGCAGACTCGCTGGCGTT
EST: TGCTACTATGGTGTGGACACTCCGAGCAAGGAGGAGCTGATTTCCTACAG GCTGAACGTAGAGGAAACGAGGAAGGTGCTTGGCGCAGACTCGCTGGCGTTEST: gi|162170994|gb|FC346893.1|FC346893
genomic: TGCTACTATGGTGTGGACACTCCGAGCAAGGAGGAGCTGATTTCCTACAGgtgccattca ... ttgtgtgaagGCTGAACGTAGAGGAAACGAGGAAGGTGCTTGGCGCAGACTCGCTGGCGTT
EST: TGCTACTATGGTGTGGACACTCCGAGCAAGGAGGAGCTGATTTCCTACAG GCTGAACGTAGAGGAAACGAGGAAGGTGCTTGGCGCAGACTCGCTGGCGTTEST: gi|162170993|gb|FC346892.1|FC346892
genomic: TGCTACTATGGTGTGGACACTCCGAGCAAGGAGGAGCTGATTTCCTACAGgtgccattca ... ttgtgtgaagGCTGAACGTAGAGGAAACGAGGAAGGTGCTTGGCGCAGACTCGCTGGCGTT
EST: ACTCCGAGCAAGGAGGAGCTGATTTCCTACAG GCTGAACGTAGAGGAAACGAGGAAGGTGCTTGGCGCAGACTCGCTGGCGTTEST: gi|162158424|gb|FC334219.1|FC334219
genomic: ACTCCGAGCAAGGAGGAGCTGATTTCCTACAGgtgccattca ... ttgtgtgaagGCTGAACGTAGAGGAAACGAGGAAGGTGCTTGGCGCAGACTCGCTGGCGTT
EST: TGCTACTATGGTGTGGACACTCCGAGCAAGGAGGAGCTGATTTCCTACAG GCTGAACGTAGAGGAAACGAGGAAGGTGCTTGGCGCAGACTCGCTGGCGTT
genomic: TGCTACTATGGTGTGGACACTCCGAGCAAGGAGGAGCTGATTTCCTACAGgtgccattca ... ttgtgtgaagGCTGAACGTAGAGGAAACGAGGAAGGTGCTTGGCGCAGACTCGCTGGCGTT
gagcgtttgttgtgtgcacggcatgttgatgggtttccgtgggtgttgtgtgaagGCTGAACGTAGAGGAAACGAGGAAGGTGCTTGGCGCAGACTCGCTGGCGTTTTTGCCGCTTGAGCGACTGAGGGGGATGCTGGAGGACGAAGCCCCGAAG
tgttgat putative branch site (score: 4)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcgagtggcaattggaatgtggtaggacggtgtttctgtggtggtgagcgtttgttgtgtgcacggcatgttgatgggtttccgtgggtgttgtgtgaagGCTGAACGTAGAGGAAACGAGGAAGGTGCTTGGCGCAGACTCGCTGGCGTTTTTGCCGCTTGAGCGACTGAGGGGGATGCTGGAGGACGAAGCCCCGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA