1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gttctatattaacaccatgttcttcttttaggttttgttcgctgtgcgtatcgtttagtcttaagatatttgcaattcagttgtatgtgaggggcgtttggtaatgtttcatcgaaattcgaatggatctttcattccgctccttatatttgatgggttgggtcttgcagTTCCTTATCTAGGGTTGTGAATAGAGCAGCTGACGGAGGCATAACATCACTACATATGGCTGCCCTCAATAGCCACATTGAGTGTGTGCATTTGTTGTTG
species | Physcomitrella patens |
transcript | PP1S55_144V6.3 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATTGTGAACAGCGATGACTCACTGTCCGTGAAAAATTATTCTGATGAAAG TTCCTTATCTAGGGTTGTGAATAGAGCAGCTGACGGAGGCATAACATCACT
genomic: ATTGTGAACAGCGATGACTCACTGTCCGTGAAAAATTATTCTGATGAAAGgttctatatt ... ggtcttgcagTTCCTTATCTAGGGTTGTGAATAGAGCAGCTGACGGAGGCATAACATCACT
aattcgaatggatctttcattccgctccttatatttgatgggttgggtcttgcagTTCCTTATCTAGGGTTGTGAATAGAGCAGCTGACGGAGGCATAACATCACTACATATGGCTGCCCTCAATAGCCACATTGAGTGTGTGCATTTGTTGTTG
atttgat putative branch site (score: 5)
ttatatttgat TA-rich tract