1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttctcgaccatggtgttgtggctttgcttcagttagtacgtaactattgcaacttttcctgttcatgaaactaactcatgtatttgtgaatgtgcgacagAACATAGTGCGCATCAGTACACCTGATATTACTCCCACAACAGCATCTCGTCCTCCAATAAATCATTCAGTGCAATCTCGCACGACTATACCTGCTTCTC
species | Physcomitrella patens |
transcript | PP1S54_95V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATGAGCCACTGGAGCGTTTCTTG AACATAGTGCGCATCAGTACACCTGATATTACTCCCACAACAGCATCTCGTEST: gi|100445401|gb|BY983030.1|BY983030
genomic: ATGAGCCACTGGAGCGTTTCTTGgtaaattatt ... tgtgcgacagAACATAGTGCGCATCAGTACACCTGATATTACTCCCACAACAGCATCTCGT
EST: CTTCCTCAGGGATGCTCGAGATGCAGGATGAGCCACTGGAGCGTTTCTTG AACATAGTGCGCATCAGTACACCTGATATTACTCCCACAACAGCATCTCGTEST: gi|208352362|gb|DC902007.1|DC902007
genomic: CTTCCTCAGGGATGCTCGAGATGCAGGATGAGCCACTGGAGCGTTTCTTGgtaaattatt ... tgtgcgacagAACATAGTGCGCATCAGTACACCTGATATTACTCCCACAACAGCATCTCGT
EST: CTTCCTCAGGGATGCTCGAGATGCAGGATGANCCACTGGANCGTTTCTTG ANCATANTGCGCATCANTACACCTGATATTACTCC-ACAACANCATCTCGTEST: gi|208390427|gb|DC933684.1|DC933684
genomic: CTTCCTCAGGGATGCTCGAGATGCAGGATGAGCCACTGGAGCGTTTCTTGgtaaattatt ... tgtgcgacagAACATAGTGCGCATCAGTACACCTGATATTACTCCCACAACAGCATCTCGT
EST: CTTCCTCAGGGATGCTCGAGATGCAGGATGAGCCACTGGACCGTTTCTTG AACATAGTGCGCATCAGTACACCTGATATTACTCCCACAACAGCATCTCGTEST: gi|208396544|gb|DC915856.1|DC915856
genomic: CTTCCTCAGGGATGCTCGAGATGCAGGATGAGCCACTGGAGCGTTTCTTGgtaaattatt ... tgtgcgacagAACATAGTGCGCATCAGTACACCTGATATTACTCCCACAACAGCATCTCGT
EST: NTTCCTCAGGGATGCTCGAGATGCAGGATGAGCCACTGGAGCGTTTC-TG AACATAGTGCGCATCAGTACACCTGATATTACTCCCACAACAGCATCTCGT
genomic: CTTCCTCAGGGATGCTCGAGATGCAGGATGAGCCACTGGAGCGTTTCTTGgtaaattatt ... tgtgcgacagAACATAGTGCGCATCAGTACACCTGATATTACTCCCACAACAGCATCTCGT
attgcaacttttcctgttcatgaaactaactcatgtatttgtgaatgtgcgacagAACATAGTGCGCATCAGTACACCTGATATTACTCCCACAACAGCATCTCGTCCTCCAATAAATCATTCAGTGCAATCTCGCACGACTATACCTGCTTCTC
aactaac putative branch site (score: 7)
atgtattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctcgaccatggtgttgtggctttgcttcagttagtacgtaactattgcaacttttcctgttcatgaaactaactcatgtatttgtgaatgtgcgacagAACATAGTGCGCATCAGTACACCTGATATTACTCCCACAACAGCATCTCGTCCTCCAATAAATCATTCAGTGCAATCTCGCACGACTATACCTGCTTCTC
- - - - - - - - - - - - tgcttca