1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagacatttgcaagactgctgtataaattcagccacttgctgcttgtacacaggtcttgacacagtgtcttcttttgctgctctttcattacttatcaactggcaatgattattgatttggaaatgcatttggttgaccagACGGCAAGGTACAAAGGACAGGCTAGGATGGCTGAACCAGGTTTTAAAAATCCTCAATGGGTGGATGGTGAACTCGTACTTTTAAATGGCAAG
species | Physcomitrella patens |
transcript | PP1S54_263V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAGGCAGCCGATTGCCGCATAGGGGAGTTTATCCGGAGGAGCTTGGTGTG ACGGCAAGGTACAAAGGACAGGCTAGGATGGCTGAACCAGGTTTTAAAAATEST: gi|162184992|gb|FC362438.1|FC362438
genomic: AAGGCAGCCGATTGCCGCATAGGGGAGTTTATCCGGAGGAGCTTGGTGTGgtaagacatt ... ggttgaccagACGGCAAGGTACAAAGGACAGGCTAGGATGGCTGAACCAGGTTTTAAAAAT
EST: GGAGGAGCTTGGTGTG ACGGCAAGGTACAAAGGACAGGCTAGGATGGCTGAACCAGGTTTTAAAAATEST: gi|162256040|gb|FC431213.1|FC431213
genomic: GGAGGAGCTTGGTGTGgtaagacatt ... ggttgaccagACGGCAAGGTACAAAGGACAGGCTAGGATGGCTGAACCAGGTTTTAAAAAT
EST: AAGGCAGCCGATTGCCGCATAGGGGAGTTTATCCGGAGGAGCTTGGTGTG ACGGCAAGGTACAAAGGACAGGCTAGGATGGCTGAACCAGGTTTTAAAAATEST: gi|162170923|gb|FC346614.1|FC346614
genomic: AAGGCAGCCGATTGCCGCATAGGGGAGTTTATCCGGAGGAGCTTGGTGTGgtaagacatt ... ggttgaccagACGGCAAGGTACAAAGGACAGGCTAGGATGGCTGAACCAGGTTTTAAAAAT
EST: AAGGCAGCCGATTGCCGCATAGGGGAGTTTATCCGGAGGAGCTTGGTGTG ACGGCAAGGTACAAAGGACAGGCTAGGATGGCTGAACCAGGTTTTAAAAAT
genomic: AAGGCAGCCGATTGCCGCATAGGGGAGTTTATCCGGAGGAGCTTGGTGTGgtaagacatt ... ggttgaccagACGGCAAGGTACAAAGGACAGGCTAGGATGGCTGAACCAGGTTTTAAAAAT
cattacttatcaactggcaatgattattgatttggaaatgcatttggttgaccagACGGCAAGGTACAAAGGACAGGCTAGGATGGCTGAACCAGGTTTTAAAAATCCTCAATGGGTGGATGGTGAACTCGTACTTTTAAATGGCAAG
tattgat putative branch site (score: 2)
aatgattattgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagacatttgcaagactgctgtataaattcagccacttgctgcttgtacacaggtcttgacacagtgtcttcttttgctgctctttcattacttatcaactggcaatgattattgatttggaaatgcatttggttgaccagACGGCAAGGTACAAAGGACAGGCTAGGATGGCTGAACCAGGTTTTAAAAATCCTCAATGGGTGGATGGTGAACTCGTACTTTTAAATGGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA