1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...accagctgagggaactgtgtatgactttaaatttatttagtattcgtagtatattgtttaaacgtagacttattatttcatttgtatggcaaaatgttagCAGATTTGAAGATGAAAACACGAAGCTCTCCAGGATGTCTTCGAAATATTGCCTTCCGCTAGTAACCTTGGAGAAATATTCTTGTACTTTTTGCA
species | Physcomitrella patens |
transcript | PP1S4_215V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TAGCGAAGGAAAAAATTCTTCTAAATTTTTGAGGAGATTTTCGTTCAGTG CAGATTTGAAGATGAAAACACGAAGCTCTCCAGGATGTCTTCGAAATATTGEST: gi|162264332|gb|FC440498.1|FC440498
genomic: TAGCGAAGGAAAAAATTCTTCTAAATTTTTGAGGAGATTTTCGTTCAGTGgtaaggcaat ... aaaatgttagCAGATTTGAAGATGAAAACACGAAGCTCTCCAGGATGTCTTCGAAATATTG
EST: TAGCGAAGGAAAAAATTCTTCTAAATTTTTGAGGAGATTTTCGTTCAGTG -A--TTTGAAGATGAAAACACGAAGCTCTCCAGGATGTCTTCGAAATATTGEST: gi|18333863|gb|BJ165879.1|BJ165879
genomic: TAGCGAAGGAAAAAATTCTTCTAAATTTTTGAGGAGATTTTCGTTCAGTGgtaaggcaat ... aaaatgttagCAGATTTGAAGATGAAAACACGAAGCTCTCCAGGATGTCTTCGAAATATTG
EST: TAGCGAAGGAAAAAATTCTTCTAAATTTTTGAGGAGATTTTCGTTCAGTG -A--TTTGAAGATGAAAACACGAAGCTCTCCAGGATGTCTTCGAAATATTGEST: gi|18332708|gb|BJ164721.1|BJ164721
genomic: TAGCGAAGGAAAAAATTCTTCTAAATTTTTGAGGAGATTTTCGTTCAGTGgtaaggcaat ... aaaatgttagCAGATTTGAAGATGAAAACACGAAGCTCTCCAGGATGTCTTCGAAATATTG
EST: TAGCGAAGGAAAAAATTCTTCTAAATTTTTGAGGAGATTTTCGTTCAGTG -A--TTTGAAGATGAAAACACGAAGCTCTCCAGGATGTCTTCGAAATATTGEST: gi|19789046|gb|BQ041060.1|BQ041060
genomic: TAGCGAAGGAAAAAATTCTTCTAAATTTTTGAGGAGATTTTCGTTCAGTGgtaaggcaat ... aaaatgttagCAGATTTGAAGATGAAAACACGAAGCTCTCCAGGATGTCTTCGAAATATTG
EST: TAGCGAAGGAAAAAATTCTTCTAAATTTTTGAGGAGATTTTCGTTCAGT- --GATTTGAAGATGAAAACACGAAGCTCTCCAGGATGTCTTCGAAATATTGEST: gi|162245009|gb|FC424967.1|FC424967
genomic: TAGCGAAGGAAAAAATTCTTCTAAATTTTTGAGGAGATTTTCGTTCAGTGgtaaggcaat ... aaaatgttagCAGATTTGAAGATGAAAACACGAAGCTCTCCAGGATGTCTTCGAAATATTG
EST: TAGCGAAGGAAAAAATTCTTCTAAATTTTTGAGGAGATTTTCGTTCAGT- --GATTTGAAGATGAAAACACGAAGCTCTCCAGGATGTCTTCGAAATATTGEST: gi|208371352|gb|DC944516.1|DC944516
genomic: TAGCGAAGGAAAAAATTCTTCTAAATTTTTGAGGAGATTTTCGTTCAGTGgtaaggcaat ... aaaatgttagCAGATTTGAAGATGAAAACACGAAGCTCTCCAGGATGTCTTCGAAATATTG
EST: TAGCGAAGGAAAAAATTCTTCTAAATTTTTGAGGAGATTTTCGTTCAGTG -A--TTTGAAGATGAAAACACGAAGCTCTCCAGGATGTCTTCGAAATATTGEST: gi|6102388|gb|AW126858.1|AW126858
genomic: TAGCGAAGGAAAAAATTCTTCTAAATTTTTGAGGAGATTTTCGTTCAGTGgtaaggcaat ... aaaatgttagCAGATTTGAAGATGAAAACACGAAGCTCTCCAGGATGTCTTCGAAATATTG
EST: TAGCGAAGGAAAAAATTCTTCTAAATTTTTGAGGAGATTTTCGTTCAGT- --GATTTGAAGATGAAAACACGAAGCTCTCCAGGATGTCTTCGAAATATTGEST: gi|162245008|gb|FC424966.1|FC424966
genomic: TAGCGAAGGAAAAAATTCTTCTAAATTTTTGAGGAGATTTTCGTTCAGTGgtaaggcaat ... aaaatgttagCAGATTTGAAGATGAAAACACGAAGCTCTCCAGGATGTCTTCGAAATATTG
EST: TAGCGAAGGAAAAAATTCTTCTAAATTTTTGAGGAGATTTTCGTTCAGT- --GATTTGAAGATGAAAACACGAAGCTCTCCAGGATGTCTTCGAAATATTGEST: gi|67696462|gb|BJ956695.1|BJ956695
genomic: TAGCGAAGGAAAAAATTCTTCTAAATTTTTGAGGAGATTTTCGTTCAGTGgtaaggcaat ... aaaatgttagCAGATTTGAAGATGAAAACACGAAGCTCTCCAGGATGTCTTCGAAATATTG
EST: TAGCGAAGGAAAAAATTCTTCTAAATTTTTGAGGAGATTTTCGTTCAGTG -A--TTTGAAGATGAAAACACGAAGCTCTCCAGGATGTCTTCGAAATATTGEST: gi|162238938|gb|FC417702.1|FC417702
genomic: TAGCGAAGGAAAAAATTCTTCTAAATTTTTGAGGAGATTTTCGTTCAGTGgtaaggcaat ... aaaatgttagCAGATTTGAAGATGAAAACACGAAGCTCTCCAGGATGTCTTCGAAATATTG
EST: TAGCGAAGGAAAAAATTCTTCTAAATTTTTGAGGAGATTTTCGTTCAGTG -A--TTTGAAGATGAAAACACGAAGCTCTCCAGGATGTCTTCGAAATATTGEST: gi|162179827|gb|FC356418.1|FC356418
genomic: TAGCGAAGGAAAAAATTCTTCTAAATTTTTGAGGAGATTTTCGTTCAGTGgtaaggcaat ... aaaatgttagCAGATTTGAAGATGAAAACACGAAGCTCTCCAGGATGTCTTCGAAATATTG
EST: TAGCGAAGGAAAAAATTCTTCTAAATTTTTGAGGAGATTTTCGTTCAGTG -A--TTTGAAGATGAAAACACGAAGCTCTCCAGGATGTCTTCGAAATATTGEST: gi|162264333|gb|FC440499.1|FC440499
genomic: TAGCGAAGGAAAAAATTCTTCTAAATTTTTGAGGAGATTTTCGTTCAGTGgtaaggcaat ... aaaatgttagCAGATTTGAAGATGAAAACACGAAGCTCTCCAGGATGTCTTCGAAATATTG
EST: TAGCGAAGGAAAAAATTCTTCTAAATTTTTGAGGAGATTTTCGTTCAGTG -A--TTTGAAGATGAAAACACGAAGCTCTCCAGGATGTCTTCGAAATATTGEST: gi|7584099|gb|AW699997.1|AW699997
genomic: TAGCGAAGGAAAAAATTCTTCTAAATTTTTGAGGAGATTTTCGTTCAGTGgtaaggcaat ... aaaatgttagCAGATTTGAAGATGAAAACACGAAGCTCTCCAGGATGTCTTCGAAATATTG
EST: AAATTCTTCTAAATTTTTGAGGAGATTTTCGTTCAGT- --GATTTGAAGATGAAAACACGAAGCTCTCCAGGATGTCTTCGAAATATTGEST: gi|162235909|gb|FC411652.1|FC411652
genomic: AAATTCTTCTAAATTTTTGAGGAGATTTTCGTTCAGTGgtaaggcaat ... aaaatgttagCAGATTTGAAGATGAAAACACGAAGCTCTCCAGGATGTCTTCGAAATATTG
EST: TAGCGAAGGAAAAAATTCTTCTAAATTTTTGAGGAGATTTTCGTTCAGTG -A--TTTGAAGATGAAAACACGAAGCTCTCCAGGATGTCTTCGAAATATTGEST: gi|162199674|gb|FC375913.1|FC375913
genomic: TAGCGAAGGAAAAAATTCTTCTAAATTTTTGAGGAGATTTTCGTTCAGTGgtaaggcaat ... aaaatgttagCAGATTTGAAGATGAAAACACGAAGCTCTCCAGGATGTCTTCGAAATATTG
EST: TAGCGAAGGAAAAAATTCTTCTAAATTTTTGAGGAGATTTTCGTTCAGTG CAGATTTGAAGATGAAAACACGAAGCTCTCCAGGATGTCTTCGAAATATTG
genomic: TAGCGAAGGAAAAAATTCTTCTAAATTTTTGAGGAGATTTTCGTTCAGTGgtaaggcaat ... aaaatgttagCAGATTTGAAGATGAAAACACGAAGCTCTCCAGGATGTCTTCGAAATATTG
gtagtatattgtttaaacgtagacttattatttcatttgtatggcaaaatgttagCAGATTTGAAGATGAAAACACGAAGCTCTCCAGGATGTCTTCGAAATATTGCCTTCCGCTAGTAACCTTGGAGAAATATTCTTGTACTTTTTGCA
ttattatttcatttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| accagctgagggaactgtgtatgactttaaatttatttagtattcgtagtatattgtttaaacgtagacttattatttcatttgtatggcaaaatgttagCAGATTTGAAGATGAAAACACGAAGCTCTCCAGGATGTCTTCGAAATATTGCCTTCCGCTAGTAACCTTGGAGAAATATTCTTGTACTTTTTGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA