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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagattcacccaaacctacaatggctatctctaactgaaatcctgctgccacaagaaaatcccaatcactaatggtttcacgcggaatctaatattgagagttgcattgcagGTATCTGTATGCAGACTTGAACGGGTTTCTGTTTTCTGCATTTGAGAATCCCCCCATGAGTGGCAAATACGTGAATAGCAGCCTGCCCTTCAAGTGCTCT

Basic information

species Physcomitrella patens
transcript PP1S49_22V6.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162266951|gb|FC441791.1|FC441791
EST:     GCCGGCGGCTACGTCTCGTATTCCAGACAAGATGCTTGTGTCTACGGATC                         GTATCTGTATGCAGACTTGAACGGGTTTCTGTTTTCTGCATTTGAGAATCC
genomic: GCCGGCGGCTACGTCTCGTATTCCAGACAAGATGCTTGTGTCTACGGATCgtaagattca ... tgcattgcagGTATCTGTATGCAGACTTGAACGGGTTTCTGTTTTCTGCATTTGAGAATCC
EST: gi|18334410|gb|BJ166427.1|BJ166427
EST:     CGTATTCCAGACAAGATGCTTGTGTCTACGGATC                         GTATCTGTATGCAGACTTGAACGGGTTTCTGTTTTCTGCATTTGAGAATCC
genomic: CGTATTCCAGACAAGATGCTTGTGTCTACGGATCgtaagattca ... tgcattgcagGTATCTGTATGCAGACTTGAACGGGTTTCTGTTTTCTGCATTTGAGAATCC
EST: gi|37842287|gb|BJ600295.1|BJ600295
EST:     TCGTATTCCAGACAAGATGCTTGTGTCTACGGATC                         GTATCTGTATGCAGACTTGAACGGGTTTCTGTTTTCTGCATTTGAGAATCC
genomic: TCGTATTCCAGACAAGATGCTTGTGTCTACGGATCgtaagattca ... tgcattgcagGTATCTGTATGCAGACTTGAACGGGTTTCTGTTTTCTGCATTTGAGAATCC
EST: gi|162266950|gb|FC441790.1|FC441790
EST:     ACGTCTCGTATTCCAGACAAGATGCTTGTGTCTACGGATC                         GTATCTGTATGCAGACTTGAACGGGTTTCTGTTTTCTGCATTTGAGAATCC
genomic: ACGTCTCGTATTCCAGACAAGATGCTTGTGTCTACGGATCgtaagattca ... tgcattgcagGTATCTGTATGCAGACTTGAACGGGTTTCTGTTTTCTGCATTTGAGAATCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatcccaatcactaatggtttcacgcggaatctaatattgagagttgcattgcagGTATCTGTATGCAGACTTGAACGGGTTTCTGTTTTCTGCATTTGAGAATCCCCCCATGAGTGGCAAATACGTGAATAGCAGCCTGCCCTTCAAGTGCTCT
                            aatctaatatt  TA-rich tract