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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtatcatggaatatttgaacagtcactttctcatttgtttgtgcgttcaatctgtgttggtgtaaatggccagagaaacttgtcgagttgtctctgaagtcctagatcagtgcgagcttgataattcattgctaacttggttgtgattttgttttgtcttatactgcagCTTCTAGGTCTTTTATTTGGATGCGTACCATTGTTGAGAGGCTTTATCTTCACCGAGCACTCTTTTCTGTATTTCTTTTTTGACAGCCTCAACATCCTTG

Basic information

species Physcomitrella patens
transcript PP1S497_6V6.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37838325|gb|BJ596333.1|BJ596333
EST:     CCTCCTGTTGTAGCCTCT                         CTTCTAGGTCTTTTATTTGGATGCGTACCATTGTTGAGAGGCTTTATCTTC
genomic: CCTCCTGTTGTAGCCTCTgtaagtatca ... tatactgcagCTTCTAGGTCTTTTATTTGGATGCGTACCATTGTTGAGAGGCTTTATCTTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcttgataattcattgctaacttggttgtgattttgttttgtcttatactgcagCTTCTAGGTCTTTTATTTGGATGCGTACCATTGTTGAGAGGCTTTATCTTCACCGAGCACTCTTTTCTGTATTTCTTTTTTGACAGCCTCAACATCCTTG
               tgctaac  putative branch site (score: 1)
                                ttttgttttgtctt  putative PPT
      ataattcatt  TA-rich tract