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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttctcgcaaatctgttgtgattgggaaggagggcgatgtcaacacttgattttgttgtattatggattcttgtgatgaagctctaagctatgggttgcagGTGATGCTTCTGACTTCACTCCCTCGAGTCGAAGAGGTATAGAATTGGAGAATCCTAACACCTGTTTATCGAATTCTAATCCCAAACTGCGGATTGGAAT

Basic information

species Physcomitrella patens
transcript PP1S48_58V6.2
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162149709|gb|FC326760.1|FC326760
EST:     GCAGCCTGCAGCAGTTCCAGCAGAATCAATTATCGGTACAAAGAGGAAAG                         GTGATGCTTCTGACTTCACTCCCTCGAGTCGAAGAGGTATAGAATTGGAGA
genomic: GCAGCCTGCAGCAGTTCCAGCAGAATCAATTATCGGTACAAAGAGGAAAGgtatgtgcgc ... tgggttgcagGTGATGCTTCTGACTTCACTCCCTCGAGTCGAAGAGGTATAGAATTGGAGA
EST: gi|162162445|gb|FC339189.1|FC339189
EST:     ATTATCGGTACAAAGAGGAAAG                         GTGATGCTTCTGACTTCACTCCCTCGAGTCGAAGAGGTATAGAATTGGAGA
genomic: ATTATCGGTACAAAGAGGAAAGgtatgtgcgc ... tgggttgcagGTGATGCTTCTGACTTCACTCCCTCGAGTCGAAGAGGTATAGAATTGGAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgattttgttgtattatggattcttgtgatgaagctctaagctatgggttgcagGTGATGCTTCTGACTTCACTCCCTCGAGTCGAAGAGGTATAGAATTGGAGAATCCTAACACCTGTTTATCGAATTCTAATCCCAAACTGCGGATTGGAAT
 acttgat  putative branch site (score: 5)
         ttgtattat  TA-rich tract