1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...aattactgggatataaacacgtaagatactgttagcgtgaatttggagtctaatatgttggatgtgaaactgtggtgtgaaatggttatgatgtgcgcagGCCTCCAAGCTTTGCTGCAGTATGCATCGCAGCCTAGTGCAGTCCAGGCCAGGACAACTTTGCAA
species | Physcomitrella patens |
transcript | PP1S48_128V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTCCCCTCATGGCTTTGTCGAGAAGATCGTCACCTTCACAAAGTCAGCTG GCCTCCAAGCTTTGCTGCAGTATGCATCGCAGCCTAGTGCAGTCCAGGCCAEST: gi|100444485|gb|BY964183.1|BY964183
genomic: TTCCCCTCATGGCTTTGTCGAGAAGATCGTCACCTTCACAAAGTCAGCTGgtcagcttct ... atgtgcgcagGCCTCCAAGCTTTGCTGCAGTATGCATCGCAGCCTAGTGCAGTCCAGGCCA
EST: TTCCCCTCATGGCTTTGTCGAGAAGATCGTCACCTTCACAAAGTCAGCTG GCCTCCAAGCTTTGCTGCAGTATGCATCGCAGCCTAGTGCAGTCCAGGCCA
genomic: TTCCCCTCATGGCTTTGTCGAGAAGATCGTCACCTTCACAAAGTCAGCTGgtcagcttct ... atgtgcgcagGCCTCCAAGCTTTGCTGCAGTATGCATCGCAGCCTAGTGCAGTCCAGGCCA
gagtctaatatgttggatgtgaaactgtggtgtgaaatggttatgatgtgcgcagGCCTCCAAGCTTTGCTGCAGTATGCATCGCAGCCTAGTGCAGTCCAGGCCAGGACAACTTTGCAA
gtctaat putative branch site (score: 6)
taatatgtt TA-rich tract