1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaggatttcttgcaaaactctcagatgcggagcatcctactctccgtattctggtcttgagggtttctcgtagcctgggcatggtgattctatgaagtgtgtttttttgaagggccaatacctttgaccacctgcaatctgctggcagagttgtcatttatttgccttttgtggtgattatgtttcagTGGCGGTGACCCGGGAGGTGGAGACTGCAGCGCTTGAAGCGCTTGCTGCAGTCCATGCATGCGGGTTGCTTCATGGAGATGTTTCCTTAAGTAACATTAT
species | Physcomitrella patens |
transcript | PP1S489_2V6.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GGTTGTATTTATCGCAACTGAATTGATTGACGGTGTTGAGCTTGGAGAAG TGGCGGTGACCCGGGAGGTGGAGACTGCAGCGCTTGAAGCGCTTGCTGCAGEST: gi|162268149|gb|FC443827.1|FC443827
genomic: GGTTGTATTTATCGCAACTGAATTGATTGACGGTGTTGAGCTTGGAGAAGgtaggatttc ... tatgtttcagTGGCGGTGACCCGGGAGGTGGAGACTGCAGCGCTTGAAGCGCTTGCTGCAG
EST: GGTTGTATTTATCGCAACTGAATTGATTGACGGTGTTGAGCTTGGAGAAG TGGCGGTGACCCGGGAGGTGGAGACTGCAGCGCTTGAAGCGCTTGCTGCAGEST: gi|162166536|gb|FC343233.1|FC343233
genomic: GGTTGTATTTATCGCAACTGAATTGATTGACGGTGTTGAGCTTGGAGAAGgtaggatttc ... tatgtttcagTGGCGGTGACCCGGGAGGTGGAGACTGCAGCGCTTGAAGCGCTTGCTGCAG
EST: GGTTGTATTTATCGCAACTGAATTGATTGACGGTGTTGAGCTTGGAGAAG TGGCGGTGACCCGGGAGGTGGAGACTGCAGCGCTTGAAGCGCTTGCTGCAGEST: gi|162182537|gb|FC357512.1|FC357512
genomic: GGTTGTATTTATCGCAACTGAATTGATTGACGGTGTTGAGCTTGGAGAAGgtaggatttc ... tatgtttcagTGGCGGTGACCCGGGAGGTGGAGACTGCAGCGCTTGAAGCGCTTGCTGCAG
EST: GGTTGTATTTATCGCAACTGAATTGATTGACGGTGTTGAGCTTGGAGAAG TGGCGGTGACCCGGGAGGTGGAGACTGCAGCGCTTGAAGCGCTTGCTGCAGEST: gi|162155335|gb|FC330727.1|FC330727
genomic: GGTTGTATTTATCGCAACTGAATTGATTGACGGTGTTGAGCTTGGAGAAGgtaggatttc ... tatgtttcagTGGCGGTGACCCGGGAGGTGGAGACTGCAGCGCTTGAAGCGCTTGCTGCAG
EST: GTATTTATCGCAACTGAATTGATTGACGGTGTTGAGCTTGGAGAAG TGGCGGTGACCCGGGAGGTGGAGACTGCAGCGCTTGAAGCGCTTGCTGCAGEST: gi|162188325|gb|FC364195.1|FC364195
genomic: GTATTTATCGCAACTGAATTGATTGACGGTGTTGAGCTTGGAGAAGgtaggatttc ... tatgtttcagTGGCGGTGACCCGGGAGGTGGAGACTGCAGCGCTTGAAGCGCTTGCTGCAG
EST: GGTTGTATTTATCGCAACTGAATTGATTGACGGTGTTGAGCTTGGAGAAG TGGCGGTGACCCGGGAGGTGGAGACTGCAGCGCTTGAAGCGCTTGCTGCAGEST: gi|162253184|gb|FC429120.1|FC429120
genomic: GGTTGTATTTATCGCAACTGAATTGATTGACGGTGTTGAGCTTGGAGAAGgtaggatttc ... tatgtttcagTGGCGGTGACCCGGGAGGTGGAGACTGCAGCGCTTGAAGCGCTTGCTGCAG
EST: GGTTGTATTTATCGCAACTGAATTGATTGACGGTGTTGAGCTTGGAGAAG TGGCGGTGACCCGGGAGGTGGAGACTGCAGCGCTTGAAGCGCTTGCTGCAGEST: gi|162186496|gb|FC363260.1|FC363260
genomic: GGTTGTATTTATCGCAACTGAATTGATTGACGGTGTTGAGCTTGGAGAAGgtaggatttc ... tatgtttcagTGGCGGTGACCCGGGAGGTGGAGACTGCAGCGCTTGAAGCGCTTGCTGCAG
EST: GGTTGTATTTATCGCAACTGAATTGATTGACGGTGTTGAGCTTGGAGAAG TGGCGGTGACCCGGGAGGTGGAGACTGCAGCGCTTGAAGCGCTTGCTGCAGEST: gi|37836434|gb|BJ594442.1|BJ594442
genomic: GGTTGTATTTATCGCAACTGAATTGATTGACGGTGTTGAGCTTGGAGAAGgtaggatttc ... tatgtttcagTGGCGGTGACCCGGGAGGTGGAGACTGCAGCGCTTGAAGCGCTTGCTGCAG
EST: GTTGTATTTATCGCAACTGAATTGATTGACGGTGTTGAGCTTGGAGAAG TGGCGGTGACCCGGGAGGTGGAGACTGCAGCGCTTGAAGCGCTTGCTGCAGEST: gi|37827840|gb|BJ585852.1|BJ585852
genomic: GTTGTATTTATCGCAACTGAATTGATTGACGGTGTTGAGCTTGGAGAAGgtaggatttc ... tatgtttcagTGGCGGTGACCCGGGAGGTGGAGACTGCAGCGCTTGAAGCGCTTGCTGCAG
EST: GGTTGTATTTATCGCAACTGAATTGATTGACGGTGTTGAGCTTGGAGAAG TGGCGGTGACCCGGGAGGTGGAGACTGCAGCGCTTGAAGCGCTTGCTGCAG
genomic: GGTTGTATTTATCGCAACTGAATTGATTGACGGTGTTGAGCTTGGAGAAGgtaggatttc ... tatgtttcagTGGCGGTGACCCGGGAGGTGGAGACTGCAGCGCTTGAAGCGCTTGCTGCAG
gcaatctgctggcagagttgtcatttatttgccttttgtggtgattatgtttcagTGGCGGTGACCCGGGAGGTGGAGACTGCAGCGCTTGAAGCGCTTGCTGCAGTCCATGCATGCGGGTTGCTTCATGGAGATGTTTCCTTAAGTAACATTAT
tcatttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggatttcttgcaaaactctcagatgcggagcatcctactctccgtattctggtcttgagggtttctcgtagcctgggcatggtgattctatgaagtgtgtttttttgaagggccaatacctttgaccacctgcaatctgctggcagagttgtcatttatttgccttttgtggtgattatgtttcagTGGCGGTGACCCGGGAGGTGGAGACTGCAGCGCTTGAAGCGCTTGCTGCAGTCCATGCATGCGGGTTGCTTCATGGAGATGTTTCCTTAAGTAACATTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG