1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaattgcacataatctgatgtcttaagccatgtttttgtaagagttaacggtatgcaatctactcgtgcctgcctccacatatgtcctaagcttggttgcactgttgcagTTTTGCAGCAACACTCAGCGGGTTGGCAAAGTTAGAGGTCGTGCAGAAAACAAATGACCGGCTAGAAGCAATCAAGGCAGATAGTATTCAT
species | Physcomitrella patens |
transcript | PP1S480_2V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAGGCTCTTCGTGAGTCAAGTGTCAGCCAAGCTGCAGAGATGGCCACTGG TTTTGCAGCAACACTCAGCGGGTTGGCAAAGTTAGAGGTCGTGCAGAAAACEST: gi|162186992|gb|FC363398.1|FC363398
genomic: AAGGCTCTTCGTGAGTCAAGTGTCAGCCAAGCTGCAGAGATGGCCACTGGgtaattgcac ... actgttgcagTTTTGCAGCAACACTCAGCGGGTTGGCAAAGTTAGAGGTCGTGCAGAAAAC
EST: AAGGCTCTTCGTGAGTCAAGTGTCAGCCAAGCTGCAGAGATGGCCACTGG TTTTGCAGCAACACTCAGCGGGTTGGCAAAGTTAGAGGTCGTGCAGAAAACEST: gi|18335133|gb|BJ167151.1|BJ167151
genomic: AAGGCTCTTCGTGAGTCAAGTGTCAGCCAAGCTGCAGAGATGGCCACTGGgtaattgcac ... actgttgcagTTTTGCAGCAACACTCAGCGGGTTGGCAAAGTTAGAGGTCGTGCAGAAAAC
EST: AAGGCTCTTCGTGAGTCAAGTGTCAGCCAAGCTGCAGAGATGGCCACTGG TTTTGCAGCAACACTCAGCGGGTTGGCAAAGTTAGAGGTCGTGCAGAAAACEST: gi|162196722|gb|FC374661.1|FC374661
genomic: AAGGCTCTTCGTGAGTCAAGTGTCAGCCAAGCTGCAGAGATGGCCACTGGgtaattgcac ... actgttgcagTTTTGCAGCAACACTCAGCGGGTTGGCAAAGTTAGAGGTCGTGCAGAAAAC
EST: AAGGCTCTTCGTGAGTCAAGTGTCAGCCAAGCTGCAGAGATGGCCACTGG TTTTGCAGCAACACTCAGCGGGTTGGCAAAGTTAGAGGTCGTGCAGAAAAC
genomic: AAGGCTCTTCGTGAGTCAAGTGTCAGCCAAGCTGCAGAGATGGCCACTGGgtaattgcac ... actgttgcagTTTTGCAGCAACACTCAGCGGGTTGGCAAAGTTAGAGGTCGTGCAGAAAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattgcacataatctgatgtcttaagccatgtttttgtaagagttaacggtatgcaatctactcgtgcctgcctccacatatgtcctaagcttggttgcactgttgcagTTTTGCAGCAACACTCAGCGGGTTGGCAAAGTTAGAGGTCGTGCAGAAAACAAATGACCGGCTAGAAGCAATCAAGGCAGATAGTATTCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT