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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gagagtactggatccagtaggggtttgaacggcatctctgaatcagtcactgggttgatttaactcactaatttctaaaggggtttgtttggccttgcagAACCATTTGGATCTGCATGCAGTGTTGTGGTTGGAGTCTTATTTGCTCAAGTGGCCAAAAACATTGATAGTGGTGTCCCATGCGCGTGAGTTCCTAAATT

Basic information

species Physcomitrella patens
transcript PP1S47_97V6.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162199130|gb|FC375822.1|FC375822
EST:     CTCGAGCTCTATTCATCGAGCCGGATCTACTGCTTTTAGACGAACCTACG                         AACCATTTGGATCTGCATGCAGTGTTGTGGTTGGAGTCTTATTTGCTCAAG
genomic: CTCGAGCTCTATTCATCGAGCCGGATCTACTGCTTTTAGACGAACCTACGgtaggtttac ... ggccttgcagAACCATTTGGATCTGCATGCAGTGTTGTGGTTGGAGTCTTATTTGCTCAAG
EST: gi|162174580|gb|FC350235.1|FC350235
EST:     CTCGAGCTCTATTCATCGAGCCGGATCTACTGCTTTTAGACGAACCTACG                         AACCATTTGGATCTGCATGCAGTGTTGTGGTTGGAGTCTTATTTGCTCAAG
genomic: CTCGAGCTCTATTCATCGAGCCGGATCTACTGCTTTTAGACGAACCTACGgtaggtttac ... ggccttgcagAACCATTTGGATCTGCATGCAGTGTTGTGGTTGGAGTCTTATTTGCTCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcactgggttgatttaactcactaatttctaaaggggtttgtttggccttgcagAACCATTTGGATCTGCATGCAGTGTTGTGGTTGGAGTCTTATTTGCTCAAGTGGCCAAAAACATTGATAGTGGTGTCCCATGCGCGTGAGTTCCTAAATT
                           ttctaaa  putative branch site (score: 2)
                       taatttctaaa  TA-rich tract