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gtgggtattccaagtttatgttcatttcttcaaatttgtgcttcatctctgaataatattatgtcatttttacagcggaattaattttgaatttgcttttgtgcaaaatcacagATTATTGGTGCAGTAAACACTGTTGTACGAGAGACTACTGGGGAGTATCAGGGCTATAACACCGATTGTGAGGGTGCCCTCTCAGCTATTGAGAAAGGAC
species | Physcomitrella patens |
transcript | PP1S47_18V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ACAAGGAAGATGCACTGAAGCTGTGTGATAGGGTTGAAAATGCTGCANAG ATTATTGGTGCAGTAAACACTGTTGTACGAGAGACTACTGNGGAGTATCAGEST: gi|162169731|gb|FC345268.1|FC345268
genomic: ACAAGGAAGATGCACTGAAGCTGTGTGATAGGGTTGAAAATGCTGCAAAGgtgggtattc ... aaaatcacagATTATTGGTGCAGTAAACACTGTTGTACGAGAGACTACTGGGGAGTATCAG
EST: ACAAGGAAGATGCACTGAAGCTGTGTGATAGGGTTGAAAATGCTGCAAAG ATTATTGGTGCAGTAAACACTGTTGTACGAGAGACTACTGGGGAGTATCAGEST: gi|162214492|gb|FC391459.1|FC391459
genomic: ACAAGGAAGATGCACTGAAGCTGTGTGATAGGGTTGAAAATGCTGCAAAGgtgggtattc ... aaaatcacagATTATTGGTGCAGTAAACACTGTTGTACGAGAGACTACTGGGGAGTATCAG
EST: ACAAGGAAGATGCACTGAAGCTGTGTGATAGGGTTGAAAATGCTGCAAAG ATTATTGGTGCAGTAAACACTGTTGTACGAGAGACTACTGGGGAGTATCAGEST: gi|162159094|gb|FC334889.1|FC334889
genomic: ACAAGGAAGATGCACTGAAGCTGTGTGATAGGGTTGAAAATGCTGCAAAGgtgggtattc ... aaaatcacagATTATTGGTGCAGTAAACACTGTTGTACGAGAGACTACTGGGGAGTATCAG
EST: ACAAGGAAGATGCACTGAAGCTGTGTGATAGGGTTGAAAATGCTGCAAAG ATTATTGGTGCAGTAAACACTGTTGTACGAGAGACTACTGGGGAGTATCAGEST: gi|162158873|gb|FC335396.1|FC335396
genomic: ACAAGGAAGATGCACTGAAGCTGTGTGATAGGGTTGAAAATGCTGCAAAGgtgggtattc ... aaaatcacagATTATTGGTGCAGTAAACACTGTTGTACGAGAGACTACTGGGGAGTATCAG
EST: ACAAGGAAGATGCACTGAAGCTGTGTGATAGGGTTGAAAATGCTGCAAAG ATTATTGGTGCEST: gi|162173166|gb|FC349233.1|FC349233
genomic: ACAAGGAAGATGCACTGAAGCTGTGTGATAGGGTTGAAAATGCTGCAAAGgtgggtattc ... aaaatcacagATTATTGGTGC
EST: ACAAGGAAGATGCACTGAAGCTGTGTGATAGGGTTGAAAATGCTGCAAAG ATTATTGGTGCAGTAAACACTGTTGTACGAGAGACTACTGGGGAGTATCAGEST: gi|162209036|gb|FC385588.1|FC385588
genomic: ACAAGGAAGATGCACTGAAGCTGTGTGATAGGGTTGAAAATGCTGCAAAGgtgggtattc ... aaaatcacagATTATTGGTGCAGTAAACACTGTTGTACGAGAGACTACTGGGGAGTATCAG
EST: ACAAGGAAGATGCACTGAAGCTGTGTGATAGGGTTGAAAATGCTGCAAAG ATTATTGGTGCAGTAAACACTGTTGTACGAGAGACTACTGGGGAGTATCAG
genomic: ACAAGGAAGATGCACTGAAGCTGTGTGATAGGGTTGAAAATGCTGCAAAGgtgggtattc ... aaaatcacagATTATTGGTGCAGTAAACACTGTTGTACGAGAGACTACTGGGGAGTATCAG
tatgtcatttttacagcggaattaattttgaatttgcttttgtgcaaaatcacagATTATTGGTGCAGTAAACACTGTTGTACGAGAGACTACTGGGGAGTATCAGGGCTATAACACCGATTGTGAGGGTGCCCTCTCAGCTATTGAGAAAGGAC
aattaat putative branch site (score: 3)
aattaattttgaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgggtattccaagtttatgttcatttcttcaaatttgtgcttcatctctgaataatattatgtcatttttacagcggaattaattttgaatttgcttttgtgcaaaatcacagATTATTGGTGCAGTAAACACTGTTGTACGAGAGACTACTGGGGAGTATCAGGGCTATAACACCGATTGTGAGGGTGCCCTCTCAGCTATTGAGAAAGGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT