1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtacttaatgtttactctgtcttttcctttggttcatgtgtttatctgcatgttacatggcacgtcagcaacgtagagatggttaaattgcctatttacatgattttgagcgcaactagcaactttttaagggagtcctggtggtcgcagGCTAGTGCCTATGTTTCAAGAGTCAGCCACACAGCGACCAGGCGAAAAAGTTACTGAAGAGGAGGGGACAAAGGAAAAGACTTTTTGGCAGAAATAT
species | Physcomitrella patens |
transcript | PP1S47_175V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTTGCCTCTGATCCACTGATTTTTCACAAGGGCAGCGAGCAAGCTCCAAG GCTAGTGCNTATGTTTCAAGAGTCAGCC-CACAGCGACCAGGCEST: gi|208400386|gb|DC925024.1|DC925024
genomic: TTTGCCTCTGATCCACTGATTTTTCACAAGGGCAGCGAGCAAGCTCCAAGgtacttaatg ... gtggtcgcagGCTAGTGCCTATGTTTCAAGAGTCAGCCACACAGCGACCAGGC
EST: TTTGCCTCTGATCCACTGATTTTTCACAAGGGCAGCGAGCAAGCTCCAAG GCTAGTGCCTATGTTTCAAGAGTCAGCCACACAGCGACCAGGCGAAAAAGTEST: gi|100375388|gb|BY948854.1|BY948854
genomic: TTTGCCTCTGATCCACTGATTTTTCACAAGGGCAGCGAGCAAGCTCCAAGgtacttaatg ... gtggtcgcagGCTAGTGCCTATGTTTCAAGAGTCAGCCACACAGCGACCAGGCGAAAAAGT
EST: TGC-TCTGANTC-ACTGATTTTTCACAAGGGCAGCGAGCAAAGCTCCA-G GCTAGTGCCTATGTTTCCAGAGTCAGCCACACAGCGACCAGGCGAAAAAGEST: gi|208353342|gb|DC946290.1|DC946290
genomic: -GCCTCTGA-TCCACTGATTTTTCACAAGGGCAGCGAGCAA-GCTCCAAGgtacttaatg ... gtggtcgcagGCTAGTGCCTATGTTTCAAGAGTCAGCCACACAGCGACCAGGCGAAAAAG
EST: TTTGCCTCTGATCCACTGATTTTTCACAAGGGCAGCGAGCAAGCTCCAAG GCTAGTGCCTATGTTTCAAGAGTCAGCCACACAGCGACCAGGCGAAAAAGTEST: gi|208363065|gb|DC946934.1|DC946934
genomic: TTTGCCTCTGATCCACTGATTTTTCACAAGGGCAGCGAGCAAGCTCCAAGgtacttaatg ... gtggtcgcagGCTAGTGCCTATGTTTCAAGAGTCAGCCACACAGCGACCAGGCGAAAAAGT
EST: TTTGCCTCTGATCCACTGATTTTTCACAAGGGCAGCGAGCAAGCTCCAAG GCTAGTGCCTATGTTTCAAGAGTCAGCCACACAGCGACCAGGCGAAAAAGTEST: gi|100379831|gb|BY949966.1|BY949966
genomic: TTTGCCTCTGATCCACTGATTTTTCACAAGGGCAGCGAGCAAGCTCCAAGgtacttaatg ... gtggtcgcagGCTAGTGCCTATGTTTCAAGAGTCAGCCACACAGCGACCAGGCGAAAAAGT
EST: TTGCCTCTGATCCACTGATTTTTTCACA-GGGCAGCGAGCAAGCTCCNAG GCTAGTGCCTATGTTTTCA-GAGTCAGCCACACAGCGACCAGGCGAAAAAGEST: gi|67724008|gb|BJ974267.1|BJ974267
genomic: TTGCCTCTGATCCACTGATTTTT-CACAAGGGCAGCGAGCAAGCTCCAAGgtacttaatg ... gtggtcgcagGCTAGTGCCTATGTTT-CAAGAGTCAGCCACACAGCGACCAGGCGAAAAAG
EST: TTTGCCTCTGATCCACTGATTTTTCACAAGGGCAGCGAGCAAGCTCCAAG GCTAGTGCCTATGTTTCAAGAGTTAGCCACACAGCGACCAGGCGAAAAAGTEST: gi|208355833|gb|DC930196.1|DC930196
genomic: TTTGCCTCTGATCCACTGATTTTTCACAAGGGCAGCGAGCAAGCTCCAAGgtacttaatg ... gtggtcgcagGCTAGTGCCTATGTTTCAAGAGTCAGCCACACAGCGACCAGGCGAAAAAGT
EST: TTTGCCTCTGATCCACTGATTTTTCACAAGGGCAGCGAGCAAGCTCCAAG GCTAGTGCNTATGTTTCAAGANTCANCCACACAGCGACCAGGEST: gi|67569178|gb|BJ942002.1|BJ942002
genomic: TTTGCCTCTGATCCACTGATTTTTCACAAGGGCAGCGAGCAAGCTCCAAGgtacttaatg ... gtggtcgcagGCTAGTGCCTATGTTTCAAGAGTCAGCCACACAGCGACCAGG
EST: TTTGCCTCTGATCCACTGATTTTTCACAAGGGCAGCGAGCAAGCTCCAAG GCTAGTGCCTATGTTTCAGGAGTCAGCCACACAGCGACCAGGCGAAEST: gi|208384047|gb|DC911225.1|DC911225
genomic: TTTGCCTCTGATCCACTGATTTTTCACAAGGGCAGCGAGCAAGCTCCAAGgtacttaatg ... gtggtcgcagGCTAGTGCCTATGTTTCAAGAGTCAGCCACACAGCGACCAGGCGAA
EST: TTTGCCTCTGATCCACTGATTTTTCACAAGGGCAGCGAGCAAGCTCCAAG GCTAGTGCCTATGTTTCAAGANTCAGCCACACAGCGACCAGGCGAAAAEST: gi|208366345|gb|DC943863.1|DC943863
genomic: TTTGCCTCTGATCCACTGATTTTTCACAAGGGCAGCGAGCAAGCTCCAAGgtacttaatg ... gtggtcgcagGCTAGTGCCTATGTTTCAAGAGTCAGCCACACAGCGACCAGGCGAAAA
EST: TTTGCCTCTGATCCACTGATTTTTCACAAGGGCAGCGAGCAAGCTCCAAG GCTAGTGCCTATGTTTCAAGAGTCAGCCACACAGCGACCAGGCGAAAAAGTEST: gi|208370373|gb|DC931785.1|DC931785
genomic: TTTGCCTCTGATCCACTGATTTTTCACAAGGGCAGCGAGCAAGCTCCAAGgtacttaatg ... gtggtcgcagGCTAGTGCCTATGTTTCAAGAGTCAGCCACACAGCGACCAGGCGAAAAAGT
EST: TTTGCCTCTGATCCACTGATTTTTCACAAGGGCAGCGAGCAAGCTCCAAG GCTAGTGCCTATGTT-CAAGAGTCAGCN-CACAGCGACCAGEST: gi|208394403|gb|DC942563.1|DC942563
genomic: TTTGCCTCTGATCCACTGATTTTTCACAAGGGCAGCGAGCAAGCTCCAAGgtacttaatg ... gtggtcgcagGCTAGTGCCTATGTTTCAAGAGTCAGCCACACAGCGACCAG
EST: TTTGCCTCTGATCCACTGATTTTTCACAAGGGCAGCGAGCAAGCTCCAAG GCTAGTGCCTATGTTTCANA-AGTCANCCACACAGCGACNAGGCEST: gi|67692423|gb|BJ952656.1|BJ952656
genomic: TTTGCCTCTGATCCACTGATTTTTCACAAGGGCAGCGAGCAAGCTCCAAGgtacttaatg ... gtggtcgcagGCTAGTGCCTATGTTTCA-AGAGTCAGCCACACAGCGACCAGGC
EST: TTTGCCTCTGATCCACTGATTTTTCACAAGGGCAGCGAGCAAGCTCCAAG GCTAGTGCCTATGTTTCAAGAGTCAGCCACACAGCGACCAGGCGAAAAAGTEST: gi|208389723|gb|DC938299.1|DC938299
genomic: TTTGCCTCTGATCCACTGATTTTTCACAAGGGCAGCGAGCAAGCTCCAAGgtacttaatg ... gtggtcgcagGCTAGTGCCTATGTTTCAAGAGTCAGCCACACAGCGACCAGGCGAAAAAGT
EST: TTTGCCTCTGATCCACTGATTTTTCACAAGGGCAGCGAGCAAGCTCCAAG NCTANTGCCTATGTTTCAAGAGTCAEST: gi|208391012|gb|DC929331.1|DC929331
genomic: TTTGCCTCTGATCCACTGATTTTTCACAAGGGCAGCGAGCAAGCTCCAAGgtacttaatg ... gtggtcgcagGCTAGTGCCTATGTTTCAAGAGTCA
EST: TTTGCCTCTGATCCACTGATTTTTCACAAGGGCAGCGAGCAAGCTCCAAG GCTAGTGCCTATGTTNCAAGAGTCAGCCACACAGCGAC-AGGCGAAAA-GTEST: gi|100364611|gb|BY947820.1|BY947820
genomic: TTTGCCTCTGATCCACTGATTTTTCACAAGGGCAGCGAGCAAGCTCCAAGgtacttaatg ... gtggtcgcagGCTAGTGCCTATGTTTCAAGAGTCAGCCACACAGCGACCAGGCGAAAAAGT
EST: TTTGCCTCTGATCCACTGATTTTTCACAAGGGCAGCGAGCAAGCTCCNAG GCTAGTGCCTATGTNNTCA-GAGTCAGCCACACAGCGACCAGGCGAAAAAGEST: gi|208385596|gb|DC937141.1|DC937141
genomic: TTTGCCTCTGATCCACTGATTTTTCACAAGGGCAGCGAGCAAGCTCCAAGgtacttaatg ... gtggtcgcagGCTAGTGCCTATGTT-TCAAGAGTCAGCCACACAGCGACCAGGCGAAAAAG
EST: TTTGCCTCTGATCCACTGATTTTTCACAGGGGCAGCGAGCAAGCTCCAAG GCTAGTGCCTATGTTNCA-GAGTCAGCC-CACAGCGACCAGGCGAAAA-GTEST: gi|208373997|gb|DC944730.1|DC944730
genomic: TTTGCCTCTGATCCACTGATTTTTCACAAGGGCAGCGAGCAAGCTCCAAGgtacttaatg ... gtggtcgcagGCTAGTGCCTATGTTTCAAGAGTCAGCCACACAGCGACCAGGCGAAAAAGT
EST: TTTGCCTCTGATCCACTGATTTTTCACAAGGGCAGCGAGCAAGCTCCAAG GCTAGTGCCTATGTTTCAAGAGTCAGCCACACAGCGACCAGGCGAAAAAGTEST: gi|208354200|gb|DC957420.1|DC957420
genomic: TTTGCCTCTGATCCACTGATTTTTCACAAGGGCAGCGAGCAAGCTCCAAGgtacttaatg ... gtggtcgcagGCTAGTGCCTATGTTTCAAGAGTCAGCCACACAGCGACCAGGCGAAAAAGT
EST: TTTGCCTCTGATCCACTGATTTTTCACAGGGGCAGCGAGCAAGCTCCAAG GCTAGTGCCTATGTTTCAAGAGTCAGCCACACAGCGACCAGGCGAAAAAGTEST: gi|7286494|gb|AW598981.1|AW598981
genomic: TTTGCCTCTGATCCACTGATTTTTCACAAGGGCAGCGAGCAAGCTCCAAGgtacttaatg ... gtggtcgcagGCTAGTGCCTATGTTTCAAGAGTCAGCCACACAGCGACCAGGCGAAAAAGT
EST: GATTTTTCACAAGGGCAGCGAGCAAGCTCCAAG GCTAGTGCCTATGTTTCAAGAGTCAGCCACACAGCGACCAGGCGAAAAAGTEST: gi|67725438|gb|BJ975697.1|BJ975697
genomic: GATTTTTCACAAGGGCAGCGAGCAAGCTCCAAGgtacttaatg ... gtggtcgcagGCTAGTGCCTATGTTTCAAGAGTCAGCCACACAGCGACCAGGCGAAAAAGT
EST: TTTGCCACTGATCCACTGATTTTTCACAAGGGCAGCGAGCAAGCTCCAAG GCTAGTGCCTATGTTTCAAGAGTCAGCCACACAGCGACCAGGCGAAAAAGTEST: gi|208389767|gb|DC933641.1|DC933641
genomic: TTTGCCTCTGATCCACTGATTTTTCACAAGGGCAGCGAGCAAGCTCCAAGgtacttaatg ... gtggtcgcagGCTAGTGCCTATGTTTCAAGAGTCAGCCACACAGCGACCAGGCGAAAAAGT
EST: TTTGCCTCTGATCCACTGATTTTTCACAAGGGCAGCGAGCA-GCTCCAAG GCTAGTGCCTATGTTNCA-GAGTCAGCC-CACAGCGACCAGGCGEST: gi|208361102|gb|DC957553.1|DC957553
genomic: TTTGCCTCTGATCCACTGATTTTTCACAAGGGCAGCGAGCAAGCTCCAAGgtacttaatg ... gtggtcgcagGCTAGTGCCTATGTTTCAAGAGTCAGCCACACAGCGACCAGGCG
EST: TTTGCCTCTGATCCACTGATTTTTCACAAGGGCAGCGAGCAAGCTCCAAG GCTAGTGCCTATGTTTCAAGAGTCAGCCACACAACGACCAGGCGAAAAAGTEST: gi|162272918|gb|FC448854.1|FC448854
genomic: TTTGCCTCTGATCCACTGATTTTTCACAAGGGCAGCGAGCAAGCTCCAAGgtacttaatg ... gtggtcgcagGCTAGTGCCTATGTTTCAAGAGTCAGCCACACAGCGACCAGGCGAAAAAGT
EST: TTTGCCTCTGATCCACTGATTTTTCACAAGGGCAGCGAGCAAGCTCCAAG GCTAGTGCCTATGTTTCAAGAGTCAGCCACACAGCGACCAGGCGAAAAAGTEST: gi|208368388|gb|DC955557.1|DC955557
genomic: TTTGCCTCTGATCCACTGATTTTTCACAAGGGCAGCGAGCAAGCTCCAAGgtacttaatg ... gtggtcgcagGCTAGTGCCTATGTTTCAAGAGTCAGCCACACAGCGACCAGGCGAAAAAGT
EST: TTTGCCTCTGATCCACTGATTTTTCACAAGGGCAGCGAGCAAGCTCCAAG GCTAGTGCCTATGTTTCAAGAGTCAGCCACACAGCGACCAGGCGAAAAAGTEST: gi|162275152|gb|FC451739.1|FC451739
genomic: TTTGCCTCTGATCCACTGATTTTTCACAAGGGCAGCGAGCAAGCTCCAAGgtacttaatg ... gtggtcgcagGCTAGTGCCTATGTTTCAAGAGTCAGCCACACAGCGACCAGGCGAAAAAGT
EST: TTTGCCTCTGATCCACTGATTTTTCACAAGGGCAGCGAGCAAGCTCCAAG GCTAGTGCCTATGTTTCAAGAGTCAGCCACACAGCGACCAGGCGAAAAAGTEST: gi|162272917|gb|FC448853.1|FC448853
genomic: TTTGCCTCTGATCCACTGATTTTTCACAAGGGCAGCGAGCAAGCTCCAAGgtacttaatg ... gtggtcgcagGCTAGTGCCTATGTTTCAAGAGTCAGCCACACAGCGACCAGGCGAAAAAGT
EST: TTTGCCTCTGATCCACTGATTTTTCACAAGGGCAGCGAGCAAGCTCCAAG GCTAGTGCCTATGTTTCAAGAGTCAGCCACACAGCGACCAGGCGAAAAAGTEST: gi|208368823|gb|DC951347.1|DC951347
genomic: TTTGCCTCTGATCCACTGATTTTTCACAAGGGCAGCGAGCAAGCTCCAAGgtacttaatg ... gtggtcgcagGCTAGTGCCTATGTTTCAAGAGTCAGCCACACAGCGACCAGGCGAAAAAGT
EST: TTTGCCTCTGATCCACTGATTTTTCACAAGGGCAGCGAGCAAGCTCCAAG GCTAGTGCCTATGTTTCAAGAGTCAGCCACACAGCGACCAGGCGAAAAAGTEST: gi|208387707|gb|DC937272.1|DC937272
genomic: TTTGCCTCTGATCCACTGATTTTTCACAAGGGCAGCGAGCAAGCTCCAAGgtacttaatg ... gtggtcgcagGCTAGTGCCTATGTTTCAAGAGTCAGCCACACAGCGACCAGGCGAAAAAGT
EST: TTTGCCTCTGATCCACTGATTTTTCACAAGGGCAGCGAGCANGCTCCA-G GCTAGTGCCTATGTTTCAAGAGTCAGCC-CACAACGACCAGGCG
genomic: TTTGCCTCTGATCCACTGATTTTTCACAAGGGCAGCGAGCAAGCTCCAAGgtacttaatg ... gtggtcgcagGCTAGTGCCTATGTTTCAAGAGTCAGCCACACAGCGACCAGGCG
ttacatgattttgagcgcaactagcaactttttaagggagtcctggtggtcgcagGCTAGTGCCTATGTTTCAAGAGTCAGCCACACAGCGACCAGGCGAAAAAGTTACTGAAGAGGAGGGGACAAAGGAAAAGACTTTTTGGCAGAAATAT
aactttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacttaatgtttactctgtcttttcctttggttcatgtgtttatctgcatgttacatggcacgtcagcaacgtagagatggttaaattgcctatttacatgattttgagcgcaactagcaactttttaagggagtcctggtggtcgcagGCTAGTGCCTATGTTTCAAGAGTCAGCCACACAGCGACCAGGCGAAAAAGTTACTGAAGAGGAGGGGACAAAGGAAAAGACTTTTTGGCAGAAATAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA