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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttaggttcgaaagttatattgtgtccttatgaaattcaggcatctaaccagcttttccaaatcattttctcaatggctgtgttatatgctgaacacgcagATCATGAAGTCTCTCCCCAACTGCACTACATTTTTGAAAA

Basic information

species Physcomitrella patens
transcript PP1S47_161V6.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162149873|gb|FC326196.1|FC326196
EST:     ATCATGCAGAAATCGAAATTGCTTTTGCGCAAGAAACCAAACTTCCTTTG                         ATCATGAAGTCTCTCCCCAACTGCACTACATTTTTGAAAA
genomic: ATCATGCAGAAATCGAAATTGCTTTTGCGCAAGAAACCAAACTTCCTTTGgtatgttcaa ... gaacacgcagATCATGAAGTCTCTCCCCAACTGCACTACATTTTTGAAAA
EST: gi|67569282|gb|BJ942106.1|BJ942106
EST:     ATCATGCAGAAATCGAAATTGCTTTTGCGCAAGAAACCAAACTTCCTTTG                         ATCATGAAGTCTCTCCCCAACTGCACTACATTTTTGAAAA
genomic: ATCATGCAGAAATCGAAATTGCTTTTGCGCAAGAAACCAAACTTCCTTTGgtatgttcaa ... gaacacgcagATCATGAAGTCTCTCCCCAACTGCACTACATTTTTGAAAA
EST: gi|162194189|gb|FC371040.1|FC371040
EST:     ATCATGCAGAAATCGAAATTGCTTTTGCGCAAGAAACCAAACTTCCTTTG                         ATCATGAAGTCTCTCCCCAACTGCACTACATTTTTGAAAA
genomic: ATCATGCAGAAATCGAAATTGCTTTTGCGCAAGAAACCAAACTTCCTTTGgtatgttcaa ... gaacacgcagATCATGAAGTCTCTCCCCAACTGCACTACATTTTTGAAAA
EST: gi|162197005|gb|FC375217.1|FC375217
EST:     ATCATGCAGAAATCGAAATTGCTTTTGCGCAAGAAACCAAACTTCCTTTG                         ATCATGAAGTCTCTCCCCAACTGCACTACATTTTTGAAAA
genomic: ATCATGCAGAAATCGAAATTGCTTTTGCGCAAGAAACCAAACTTCCTTTGgtatgttcaa ... gaacacgcagATCATGAAGTCTCTCCCCAACTGCACTACATTTTTGAAAA
EST: gi|162151930|gb|FC328891.1|FC328891
EST:     ATCATGCAGAAATCGAAATTGCTTTTGCGCAAGAAACCAAACTTCCTTTG                         ATCATGAAGTCTCTCCCCAACTGCACTACATTTTTGAAAA
genomic: ATCATGCAGAAATCGAAATTGCTTTTGCGCAAGAAACCAAACTTCCTTTGgtatgttcaa ... gaacacgcagATCATGAAGTCTCTCCCCAACTGCACTACATTTTTGAAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaccagcttttccaaatcattttctcaatggctgtgttatatgctgaacacgcagATCATGAAGTCTCTCCCCAACTGCACTACATTTTTGAAAA
 atctaac  putative branch site (score: 2)
             aaatcatttt  TA-rich tract