1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtaagtgcagagtttcttattttctattaaggtggcttcttttgtccattatgttgtgtactctattcatcacctgttcacttcgtttttgtggtttaaaattatctttaagttctgagcattgttttagttagtattttttaatttttattcttatctttgtgacagATTGCAACAGCTCTGTTCGCAAATTCTCCCTTCACGGAAGGGAAGCCGAATGGTTTTTTGAGCTTCAGGAG
species | Physcomitrella patens |
transcript | PP1S479_14V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTGAGGCGGACATGGTTAAAAAGTTCCGCGTCGGGCTTGCCTTACAGCCT ATTGCAACAGCTCTGTTCGCAAATTCTCCCTTCACGGAAGGGAAGCCGAATEST: gi|208384006|gb|DC907397.1|DC907397
genomic: CTGAGGCGGACATGGTTAAAAAGTTCCGCGTCGGGCTTGCCTTACAGCCTgtaagtgcag ... tttgtgacagATTGCAACAGCTCTGTTCGCAAATTCTCCCTTCACGGAAGGGAAGCCGAAT
EST: CTGAGGCGGACATGGTTAAAAAGTTCCGCGTCGGGCTTGCCTTACAGCCT ATTGCAACAGCTCTGTTCGCAAATTCTCCCTTCACGGAAGGGAAGCCGAATEST: gi|162239290|gb|FC415389.1|FC415389
genomic: CTGAGGCGGACATGGTTAAAAAGTTCCGCGTCGGGCTTGCCTTACAGCCTgtaagtgcag ... tttgtgacagATTGCAACAGCTCTGTTCGCAAATTCTCCCTTCACGGAAGGGAAGCCGAAT
EST: CTGAGGCGGACATGGTTAAAAAGTTCCGCGTCGGGCTTGCCTTACAGCCT ATTGCAACAGCTCTGTTCGCAAATTCTCCCTTCACGGAAGGGAAGCCGAAT
genomic: CTGAGGCGGACATGGTTAAAAAGTTCCGCGTCGGGCTTGCCTTACAGCCTgtaagtgcag ... tttgtgacagATTGCAACAGCTCTGTTCGCAAATTCTCCCTTCACGGAAGGGAAGCCGAAT
tctgagcattgttttagttagtattttttaatttttattcttatctttgtgacagATTGCAACAGCTCTGTTCGCAAATTCTCCCTTCACGGAAGGGAAGCCGAATGGTTTTTTGAGCTTCAGGAG
ttttaat putative branch site (score: 3)
tttttattcttatctt CT-rich tract
attgttttagttagta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgcagagtttcttattttctattaaggtggcttcttttgtccattatgttgtgtactctattcatcacctgttcacttcgtttttgtggtttaaaattatctttaagttctgagcattgttttagttagtattttttaatttttattcttatctttgtgacagATTGCAACAGCTCTGTTCGCAAATTCTCCCTTCACGGAAGGGAAGCCGAATGGTTTTTTGAGCTTCAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT