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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttgtcttctttactattgacatttcatattataatcgtcatgcaggatttataaaggtccccccacctctctctccctctccttcacaatgaaatctatcgtcagtgaaaaggggagctgcagagtgtttcaaatctcactgttatttgtcttgcagCACGGACGCCACGAGTTGATGGCAAGGATTTCTTTCGTCAAGCCAG

Basic information

species Physcomitrella patens
transcript PP1S478_14V6.2
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18333295|gb|BJ165309.1|BJ165309
EST:     CCAGTCCACCACTGCTCCAAACTCTCCACCAAGTTCCGGCTCCATGCCAT                         CACGGACGCCACGAGTTGATGGCAAGGATTTCTTTCGTCAAGCCAG
genomic: CCAGTCCACCACTGCTCCAAACTCTCCACCAAGTTCCGGCTCCATGCCATgtatgttgtc ... tgtcttgcagCACGGACGCCACGAGTTGATGGCAAGGATTTCTTTCGTCAAGCCAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagtgaaaaggggagctgcagagtgtttcaaatctcactgttatttgtcttgcagCACGGACGCCACGAGTTGATGGCAAGGATTTCTTTCGTCAAGCCAG
                               atctcac  putative branch site (score: 3)
                                           tttgtctt  putative PPT
                         tttcaaat  TA-rich tract