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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taacaacacagctttatgtaacaaaatgagtaataaagttgcaatcctaaatgtggataaagtcggttgagtgaactcacgtatttgggtactgaatcagGTATGGTCCTTGTCAAACCCCGACACTCGGATTCTGTGTGGAACGCCACCTCCGCATCACAACCTTCGTTCCCCAGCCTTTTTGGGTTGTGAGACCTCAC

Basic information

species Physcomitrella patens
transcript PP1S474_3V6.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S474_3V6.1 (Physcomitrella patens), 3'ss of exon 6
lower sequence: GRMZM2G102181_T01 (Zea mays), 3'ss of exon 1
taacaacacagctttatgtaacaaaatgagtaataaa-gttgcaatcctaaatgtggataaagtcggtt--gagtgaactcacgt---atttgggtactgaatcagGTATGGTCCTTGTCAAACCCCGACACTCGGATTCTGTGTGGAACGCCACCTCCGCATCACAACCTTCGTTCCCCAGCCTTTTTGGGTTGTGAGACCTCAC
        ||  |     |||||| ||   | | |   | |    | ||   | |   |||  |   |   ||    | | | ||     ||   |  | ||||||||||||||| || ||||| || ||||| |||||||||||  ||||||| |  |  ||||| || ||    ||  ||   || |||    ||| | |  | 
------ttcaaatcatcataacaatatcttttacatttgctctgcttctgtcttttagtaatatttttccagaactgatttaagttcggctttccttgtaaatcagGTATGGTCCATGCCAAACACCTACACTTGGATTCTGTGTACAACGCCATCAGCAAATCACCACATTTAAACCAGAGAAATTCTGGTCCTTGAAAACGTAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctaaatgtggataaagtcggttgagtgaactcacgtatttgggtactgaatcagGTATGGTCCTTGTCAAACCCCGACACTCGGATTCTGTGTGGAACGCCACCTCCGCATCACAACCTTCGTTCCCCAGCCTTTTTGGGTTGTGAGACCTCAC
                            aactcac  putative branch site (score: 2)
           ataaagt  TA-rich tract