1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...caactagtctaccagtgatttgaatgccagaagtgatctagtgccactattagtatattctcatgctctactactgtttccgacatgtttttcgtcttagGGAGTACATGGAGATATATCACCAGAAGATAGAAGAATATTAGAAGCTGAATTCTGCTTGCGGCACAACCGTCATACTGTTCCACTCTTGGACCGTTTGC
species | Physcomitrella patens |
transcript | PP1S46_84V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTGCTGGAATAATTATGCATCATGCCGCCCGTGACAGAATCATTCGCTCT GGAGTACATGGAGATATATCACCAGAAGATAGAAGAATATTAGAAGCTGAAEST: gi|162243420|gb|FC425116.1|FC425116
genomic: CTGCTGGAATAATTATGCATCATGCCGCCCGTGACAGAATCATTCGCTCTgtaagactac ... ttcgtcttagGGAGTACATGGAGATATATCACCAGAAGATAGAAGAATATTAGAAGCTGAA
EST: CTGCTGGAATAATTATGCATCATGCCGCCCGTGACAGAATCATTCGCTCT GGAGTACATGGAGATATATCACCAGAAGATAGAAGAATATTAGAAGCTGAAEST: gi|162243421|gb|FC425117.1|FC425117
genomic: CTGCTGGAATAATTATGCATCATGCCGCCCGTGACAGAATCATTCGCTCTgtaagactac ... ttcgtcttagGGAGTACATGGAGATATATCACCAGAAGATAGAAGAATATTAGAAGCTGAA
EST: CTGCTGGAATAATTATGCATCATGCCGCCCGTGACAGAATCATTCGCTCT GGAGTACATGGAGATATATCACCAGAAGATAGAAGAATATTAGAAGCTGAAEST: gi|162261611|gb|FC438044.1|FC438044
genomic: CTGCTGGAATAATTATGCATCATGCCGCCCGTGACAGAATCATTCGCTCTgtaagactac ... ttcgtcttagGGAGTACATGGAGATATATCACCAGAAGATAGAAGAATATTAGAAGCTGAA
EST: CTGCTGGAATAATTATGCATCATGCCGCCCGTGACAGAATCATTCGCTCT GGAGTACATGGAGATATATCACCAGAAGATAGAAGAATATTAGAAGCTGAA
genomic: CTGCTGGAATAATTATGCATCATGCCGCCCGTGACAGAATCATTCGCTCTgtaagactac ... ttcgtcttagGGAGTACATGGAGATATATCACCAGAAGATAGAAGAATATTAGAAGCTGAA
actattagtatattctcatgctctactactgtttccgacatgtttttcgtcttagGGAGTACATGGAGATATATCACCAGAAGATAGAAGAATATTAGAAGCTGAATTCTGCTTGCGGCACAACCGTCATACTGTTCCACTCTTGGACCGTTTGC
tttttcgtctt CT-rich tract
tagtatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caactagtctaccagtgatttgaatgccagaagtgatctagtgccactattagtatattctcatgctctactactgtttccgacatgtttttcgtcttagGGAGTACATGGAGATATATCACCAGAAGATAGAAGAATATTAGAAGCTGAATTCTGCTTGCGGCACAACCGTCATACTGTTCCACTCTTGGACCGTTTGC
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