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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatgttcaatttccaaggcacgtttagcttactctagattttggttctgagtgggtagaacaagggatcttttctaaaatgttaatttctgctacctcagGGGACTGTAAGAGTAATATCCATTTGTGGGAGCCTACCCCGGGAGGGAAGTGGGCGGTTGAAAAGACTCCATACACGGGTCACTCTGCTAGCGTTGAGGA

Basic information

species Physcomitrella patens
transcript PP1S46_317V6.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208384348|gb|DC928099.1|DC928099
EST:     GGGCTATGCTCTTGACTGGAGTCCAATTACTGCAGGCCGTCTTCTTTCTG                         GGGACTGTAAGAGTAATATCCATTTGTGGGAGCCTACCCCGGGAGGGAAGT
genomic: GGGCTATGCTCTTGACTGGAGTCCAATTACTGCAGGCCGTCTTCTTTCTGgtatgttggc ... gctacctcagGGGACTGTAAGAGTAATATCCATTTGTGGGAGCCTACCCCGGGAGGGAAGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgagtgggtagaacaagggatcttttctaaaatgttaatttctgctacctcagGGGACTGTAAGAGTAATATCCATTTGTGGGAGCCTACCCCGGGAGGGAAGTGGGCGGTTGAAAAGACTCCATACACGGGTCACTCTGCTAGCGTTGAGGA
                                        tttctgct  CT-rich tract
                     atcttttctaaaatgt  TA-rich tract