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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattgttctcgtatttggtttaatttttcgatcctgaataagtacgttgcgacttatttactctggcaaggagaacttgggtaaagacaatgtgaatgactaccattgagttttgaagtggattttttgtggccagtagtagagtaatcagactgtctacacatcgtttatgcagTTGCAAAGCCATTGGTGGCTGATGGTTCTGCCAAGTCACATGCCATGTCACTTGCATATGACCGTTTTGGGCTATCTTCCCTGGACACTCCCCTTGTTCT

Basic information

species Physcomitrella patens
transcript PP1S46_310V6.3
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100424319|gb|BY958425.1|BY958425
EST:     GTCCTGCATTCCATCCTCCGTAGCTGAAGCAGGATTGAAGCTGCCTTTGG                         TTGCAAAGCCATTGGTGGCTGATGGTTCTGCC
genomic: GTCCTGCATTCCATCCTCCGTAGCTGAAGCAGGATTGAAGCTGCCTTTGGgtaattgttc ... gtttatgcagTTGCAAAGCCATTGGTGGCTGATGGTTCTGCC
EST: gi|67572564|gb|BJ945388.1|BJ945388
EST:     GTCCTGCATTCCATCCTCCGTAGCTGAAGCAGGATTGAAGCTGCCTTTGG                         TTGCAAAGCCATTGGTGGCTGATGGTTCTGCCAAGTCACATGCCATGTCAC
genomic: GTCCTGCATTCCATCCTCCGTAGCTGAAGCAGGATTGAAGCTGCCTTTGGgtaattgttc ... gtttatgcagTTGCAAAGCCATTGGTGGCTGATGGTTCTGCCAAGTCACATGCCATGTCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattttttgtggccagtagtagagtaatcagactgtctacacatcgtttatgcagTTGCAAAGCCATTGGTGGCTGATGGTTCTGCCAAGTCACATGCCATGTCACTTGCATATGACCGTTTTGGGCTATCTTCCCTGGACACTCCCCTTGTTCT
                                              tttat  TA-rich tract